Browse Element(s) Details


Os.23707.2.S1_at

Description gb:NM_185214.1
DB_XREF= gi:34897513
GEN=OSJNBb0043P23.19
TID=Os.23707.2
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.23707 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) unknown protein (OSJNBb0043P23.19), mRNA.
PROD=unknown protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g629104/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g62870Os.14847.1.S1_at11/113+35501850..35504003RNA polymerase Rpb8 family protein, expressed
LOC_Os03g62880OsAffx.1594.1.S1_at11/113+35510622..35511544hypothetical protein
LOC_Os03g62900OsAffx.25801.1.S1_at11/113+35522435..35525874hypothetical protein
LOC_Os03g62910Os.23707.1.S1_at11/113+35528696..35535002expressed protein
LOC_Os03g62910Os.23707.2.S1_at4/113+35528696..35535002expressed protein
LOC_Os03g62920OsAffx.25802.1.S1_at11/113+35539574..35540016hypothetical protein
LOC_Os03g62950Os.37320.2.S1_x_at11/113+35545465..35546799expressed protein
LOC_Os03g62950Os.37320.1.S1_at11/113+35545465..35546799expressed protein
LOC_Os03g62950Os.37320.2.S1_at11/113+35545465..35546799expressed protein
LOC_Os03g62974OsAffx.10400.1.S1_x_at11/113+35554321..35558940hypothetical protein
LOC_Os03g62974OsAffx.25805.1.S1_x_at11/113+35554321..35558940hypothetical protein
LOC_Os03g62974OsAffx.10400.1.S1_at11/113+35554321..35558940hypothetical protein
LOC_Os03g62974OsAffx.25805.1.S1_at11/113+35554321..35558940hypothetical protein
LOC_Os03g62974Os.32503.1.S1_x_at2/113+35554321..35558940hypothetical protein
LOC_Os03g62974OsAffx.29203.3.A1_x_at2/113+35554321..35558940hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23707.2.S1_at--9--3251Chr03:35534341..35534365 (25 bp)
CAAGCTAAACAGGTTTTCTGATATT
LOC_Os03g62910
Os.23707.2.S1_at--169--351Chr03:35534400..35534424 (25 bp)
ATAACAGTGCCAAGTTACGTCTCAA
LOC_Os03g62910
Os.23707.2.S1_at--878--1111Chr03:35534405..35534429 (25 bp)
AGTGCCAAGTTACGTCTCAAAATCC
LOC_Os03g62910
Os.23707.2.S1_at--1106--10731Chr03:35534447..35534471 (25 bp)
TTGAACTACATACAGGTGGCCTGTG
LOC_Os03g62910
Os.23707.2.S1_at--605--3231NONE
CTACCGGTAGAATATCCGGCACAGC
NONE
Os.23707.2.S1_at--134--10031NONE
TAGAATATCCGGCACAGCGCTAGAG
NONE
Os.23707.2.S1_at--285--5231NONE
GAATATCCGGCACAGCGCTAGAGAG
NONE
Os.23707.2.S1_at--128--971Chr03:35536410..35536434 (25 bp)
AGGAGCGCGATAGAGACCGTCACCT
NONE
Os.23707.2.S1_at--60--291Chr03:35536419..35536443 (25 bp)
ATAGAGACCGTCACCTCAGTGGAGG
NONE
Os.23707.2.S1_at--112--1671Chr03:35536465..35536489 (25 bp)
AGCCCGGGAGGAGTTCAATGGAAAT
NONE
Os.23707.2.S1_at--1077--3151Chr03:35536491..35536515 (25 bp)
AATTGCTAATCGGGCGGAGCTTACG
NONE
Target Sequence 
CAAGCTAAACAGGTTTTCTGATATTATATATATATATATATATNTANNTATATATATATATAACAGTGCCAAGTTACGTC
TCAAAATCCNTCANNNNNTTGCGTATATTGAACTACATACAGGTGGCCTGTGCCCTTGCCATATTGGCGTCCTCATGACG
ATGTGGAAGAGCAAGAACCCCCANGAGGNCTGTGAATACCANGTGCACATACAGAAATGGTGAAAGATGGTGCTACCGGT
AGAATATCCGGCACAGCGCTAGAGAGNNNNAGGAGCGCGATAGAGACCGTCACCTCAGTGGAGGGAGANCAGCNAAGCGT
GCCGGGAGCCCGGGAGGAGTTCAATGGAAATAAATTGCTAATCGGGCGGAGCTTACG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23707.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis