Browse Element(s) Details


Os.23780.1.A1_at

Description gb:AK120849.1
DB_XREF= gi:37990472
TID=Os.23780.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.23780 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023023F02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023023F02, full insert sequence.
FL= gb:AK120849.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4120011/11Lipase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g41160Os.6126.1.S1_at11/114+24197226..24199350Protein kinase domain containing protein, expressed
LOC_Os04g41170OsAffx.10981.2.S1_at10/114+24201190..24202815retrotransposon protein, putative, unclassified
LOC_Os04g41170OsAffx.10981.1.S1_at9/114+24201190..24202815retrotransposon protein, putative, unclassified
LOC_Os04g41180OsAffx.14229.1.S1_at11/114+24204691..24205725hypothetical protein
LOC_Os04g41189NANA4+24208009..24208272hypothetical protein
LOC_Os04g41200Os.23780.1.A1_at11/114+24212531..24221252Lipase family protein, expressed
LOC_Os04g41210NANA4+24225354..24225750hypothetical protein
LOC_Os04g41220Os.17140.1.S1_at11/114+24236131..24239951transposon protein, putative, Mutator sub-class, expressed
LOC_Os04g41220Os.17140.1.S1_x_at11/114+24236131..24239951transposon protein, putative, Mutator sub-class, expressed
LOC_Os04g41220OsAffx.12229.1.S1_at2/114+24236131..24239951transposon protein, putative, Mutator sub-class, expressed
LOC_Os04g41220OsAffx.16833.2.S1_at1/114+24236131..24239951transposon protein, putative, Mutator sub-class, expressed
LOC_Os04g41229Os.7694.1.S1_at11/114+24242092..24249850Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os04g41229Os.51233.1.S1_at11/114+24242092..24249850Helix-loop-helix DNA-binding domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006629biological_processlipid metabolism
GO:0004806molecular_functiontriacylglycerol lipase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23780.1.A1_at--3--631Chr04:24212903..24212927 (25 bp)
ATGCTGCCAGCATATTTCTATGGAA
LOC_Os04g41200
Os.23780.1.A1_at--1115--6031Chr04:24212857..24212881 (25 bp)
GAGATCTCTGTGACGACAGCTCTAC
LOC_Os04g41200
Os.23780.1.A1_at--1030--9871Chr04:24212835..24212859 (25 bp)
TACATTCCGCTGAGCTTACTGACAG
LOC_Os04g41200
Os.23780.1.A1_at--611--5011Chr04:24212795..24212819 (25 bp)
GCAGGCACCGGACGCATGGATCAAA
LOC_Os04g41200
Os.23780.1.A1_at--976--10411Chr04:24212733..24212757 (25 bp)
TTATTTCTATCTACCTACCTACCTT
LOC_Os04g41200
Os.23780.1.A1_at--326--10871Chr04:24212710..24212734 (25 bp)
TTGGCAATGCCTTGTGCGTGTACAT
LOC_Os04g41200
Os.23780.1.A1_at--170--51Chr04:24212687..24212711 (25 bp)
ATTGATCATCTAGTGCAGGCCTACA
LOC_Os04g41200
Os.23780.1.A1_at--894--871Chr04:24212671..24212695 (25 bp)
AGGCCTACACCCTGATAGTAGCGGT
LOC_Os04g41200
Os.23780.1.A1_at--324--6971Chr04:24212654..24212678 (25 bp)
GTAGCGGTTTGTTCTCATTCTTTAT
LOC_Os04g41200
Os.23780.1.A1_at--695--111Chr04:24212638..24212662 (25 bp)
ATTCTTTATTCTGCAGCCATTCCTG
LOC_Os04g41200
Os.23780.1.A1_at--832--3291Chr04:24212562..24212586 (25 bp)
CACACGTGTTAGCTAGATTGACTGA
LOC_Os04g41200
Target Sequence 
ATGCTGCCAGCATATTTCTATGGAAAGCAGTTATGTCTGTTTACATGAGATCTCTGTGACGACAGCTCTACATTCCGCTG
AGCTTACTGACAGTCCTAGACTGGCTAGGCAGGCACCGGACGCATGGATCAAAAGAAATCTGACGACTTCATATACAGCA
AAGCAACATCTTATTTCTATCTACCTACCTACCTTGGCAATGCCTTGTGCGTGTACATTGATCATCTAGTGCAGGCCTAC
ACCCTGATAGTAGCGGTTTGTTCTCATTCTTTATTCTGCAGCCATTCCTGCTTGTTNATATCCATTTTTTAATTTGTGCA
AGTTAACNTGATGNNCATATTCACACGTGTTAGCTAGATTGACTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23780.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis