Browse Element(s) Details


Os.23841.1.A1_at

Description gb:CB638922
DB_XREF= gi:29633913
DB_XREF=OSJNEa07O04.r
CLONE=OSJNEa07O04
TID=Os.23841.1
CNT=1
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.23841 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequences
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0412011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g04090Os.31762.2.S1_x_at11/111+1772846..1774907expressed protein
LOC_Os01g04090Os.31762.1.S1_at11/111+1772846..1774907expressed protein
LOC_Os01g04100Os.27368.1.A1_at11/111+1777892..1779183expressed protein
LOC_Os01g04100Os.45428.1.S1_at1/111+1777892..1779183expressed protein
LOC_Os01g04110Os.10066.2.S1_at5/111+1786432..1788237expressed protein
LOC_Os01g04120Os.45427.1.A1_at11/111+1798832..1803069expressed protein
LOC_Os01g04120Os.23841.1.A1_at11/111+1798832..1803069expressed protein
LOC_Os01g04130Os.35230.1.S1_at9/111+1809784..1814403peptidyl-tRNA hydrolase family protein, expressed
LOC_Os01g04130OsAffx.1926.1.S1_at9/111+1809784..1814403peptidyl-tRNA hydrolase family protein, expressed
LOC_Os01g04140Os.45976.1.S1_x_at4/111+1816330..1819318transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g04140Os.45976.1.S1_at2/111+1816330..1819318transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g04150Os.46306.1.S1_x_at6/111+1822238..1826175transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0003676molecular_functionnucleic acid binding
GO:0003700molecular_functiontranscription factor activity
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23841.1.A1_at--842--911Chr01:1803007..1803031 (25 bp)
AGGCTTGCACACACACATGATCTGA
LOC_Os01g04120
Os.23841.1.A1_at--852--472Chr02:2805120..2805139 (20 bp)
ATCTGATCCTCCTGGATGCTGCAAA
NONE
Os.23841.1.A1_at--635--7351Chr01:1802945..1802969 (25 bp)
GTGAATGCATGGCAATTCCTTCCTC
LOC_Os01g04120
Os.23841.1.A1_at--1069--10331Chr01:1802872..1802896 (25 bp)
TTTACAAGTGCCAGTGACCTCTCAG
LOC_Os01g04120
Os.23841.1.A1_at--1073--5831Chr01:1802857..1802881 (25 bp)
GACCTCTCAGGAGTTGTCTTTTCTC
LOC_Os01g04120
Os.23841.1.A1_at--221--10391Chr01:1802839..1802863 (25 bp)
TTTTCTCTACAAATGACGCCTATGG
LOC_Os01g04120
Os.23841.1.A1_at--1074--2291Chr01:1801150..1801174 (25 bp)
AAAGGCGATTCTTTGCCGAGGTCAT
LOC_Os01g04120
Os.23841.1.A1_at--981--4491Chr01:1801136..1801160 (25 bp)
GCCGAGGTCATCCATCATCATGATA
LOC_Os01g04120
Os.23841.1.A1_at--285--3531Chr01:1800059..1800083 (25 bp)
CATGCACATCCATCCAACTTAATTT
LOC_Os01g04120
Os.23841.1.A1_at--1113--8951Chr01:1800035..1800059 (25 bp)
TGACAGCAACTCACTGCAGCTTAGC
LOC_Os01g04120
Os.23841.1.A1_at--876--9551Chr01:1800000..1800024 (25 bp)
TCTTAGTTCTCTTCTTCTGTAGCAA
LOC_Os01g04120
Target Sequence 
AGGCTTGCACACACACATGATCTGATCCTCCTGGATGCTGCAAAAGTTGCAATGTGTATATAGTGAATGCATGGCAATTC
CTTCCTCCTTTTGATTGTAAGTCAAACATGATTTCTTCTAACAAGGTAGTTCAACTTTACAAGTGCCAGTGACCTCTCAG
GAGTTGTCTTTTCTCTACAAATGACGCCTATGGCAAGTACAAAGACAAGAAAACCCACCGCATCAGCTGAGCTTTTAAGA
GACATAATATTGATTCCAGGGATGGGACTCAAAGGCGATTCTTTGCCGAGGTCATCCATCATCATGATAGGAATTGAAAG
CTATAGCCCACACAACGGAACAAAACGGAGCAAATACCTCCAGGTCTTATATATACTGCCCCTTCTCACCTGACACAGCT
CCAACCCATGCACATCCATCCAACTTAATTTGACAGCAACTCACTGCAGCTTAGCTCTCTTTCTCTCTTAGTTCTCTTCT
TCTGTAGCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23841.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis