Browse Element(s) Details


Os.23915.1.S1_at

Description gb:AK068309.1
DB_XREF= gi:32978327
TID=Os.23915.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.23915 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013149B16, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013149B16, full insert sequence.
FL= gb:AK068309.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5536011/11DnaJ domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g55310NANA3+31408868..31410664SWIB complex BAF60b domain-containing protein, putative, expressed
LOC_Os03g55320Os.38297.1.S1_a_at11/113+31411064..31413815protein phosphatase 2C family protein, putative, expressed
LOC_Os03g55330Os.51893.1.S1_at11/113+31415190..31419011ankyrin repeat family protein, putative, expressed
LOC_Os03g55340Os.52369.1.S1_at11/113+31419097..31422237pentatricopeptide, putative, expressed
LOC_Os03g55350Os.10403.1.S1_at11/113+31426929..31429788cucumisin-like serine protease, putative, expressed
LOC_Os03g55360Os.23915.1.S1_at11/113+31434870..31439304DnaJ domain containing protein, expressed
LOC_Os03g55370OsAffx.13493.1.S1_at11/113+31440423..31441343hypothetical protein
LOC_Os03g55370OsAffx.24548.1.S1_x_at1/113+31440423..31441343hypothetical protein
LOC_Os03g55380Os.55956.1.S1_at11/113+31442709..31446679prolyl 4-hydroxylase, putative, expressed
LOC_Os03g55389Os.1175.1.S1_at10/113+31447755..31453402Casein kinase II, alpha chain 1, putative, expressed
LOC_Os03g55389Os.28405.1.S1_x_at5/113+31447755..31453402Casein kinase II, alpha chain 1, putative, expressed
LOC_Os03g55400Os.55702.1.S1_at11/113+31456300..31457825expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006457biological_processprotein folding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23915.1.S1_at--1020--351Chr03:31438585..31438609 (25 bp)
ATAATTACTTGGCTTCTCGACTGGA
LOC_Os03g55360
Os.23915.1.S1_at--632--5731Chr03:31438603..31438627 (25 bp)
GACTGGAGTTTAATCTACTTGGCAT
LOC_Os03g55360
Os.23915.1.S1_at--570--10791Chr03:31438629..31438653 (25 bp)
TTGATTTTATATTAGGCGAGCACCC
LOC_Os03g55360
Os.23915.1.S1_at--837--10091Chr03:31438641..31438665 (25 bp)
TAGGCGAGCACCCTCTAAATTTGGT
LOC_Os03g55360
Os.23915.1.S1_at--528--5391Chr03:31438679..31438703 (25 bp)
GAAGCAGCCACCGAGCTTAGCGTGA
LOC_Os03g55360
Os.23915.1.S1_at--776--1771Chr03:31438688..31438712 (25 bp)
ACCGAGCTTAGCGTGAACATTCTAA
LOC_Os03g55360
Os.23915.1.S1_at--129--7951Chr03:31438910..31438934 (25 bp)
GGATATTGTATTTTCTTAGCCTCTT
LOC_Os03g55360
Os.23915.1.S1_at--577--9551Chr03:31438931..31438955 (25 bp)
TCTTAGGTGTCGACTGAGTTGCGCA
LOC_Os03g55360
Os.23915.1.S1_at--6--8911Chr03:31438945..31438969 (25 bp)
TGAGTTGCGCATGCTATTGTGGGCA
LOC_Os03g55360
Os.23915.1.S1_at--1001--5971Chr03:31438984..31439008 (25 bp)
GAGACAATGAATTTTGCTTCTATAG
LOC_Os03g55360
Os.23915.1.S1_at--747--2051Chr03:31439198..31439222 (25 bp)
ACTTCATATGCTTGGAATTTTCTGA
LOC_Os03g55360
Target Sequence 
ATAATTACTTGGCTTCTCGACTGGAGTTTAATCTACTTGGCATATTGATTTTATATTAGGCGAGCACCCTCTAAATTTGG
TGAAGGTGAGAGATGAAGCAGCCACCGAGCTTAGCGTGAACATTCTAAGAAAAGGGGAAAGCACTATGAAAAAGCACCAG
CAAGCAGCAACAGCTCTGCATGGAGAGGGATATTGTATTTTCTTAGCCTCTTAGGTGTCGACTGAGTTGCGCATGCTATT
GTGGGCAAGTTGTTTATGTTTGAGACAATGAATTTTGCTTCTATAGTTCCACCTGATGGAAGACTACACTTTGATCTCGG
CACACTAACTCTCTGCAGTTGACCTTCATACGGAAACTTTGGCTCTTCGGTAAAACTTAGTTCAAGAAGATAATAGATCT
GTTAGTGTCTGGNNNNNNNNNNNNNNNNGAGGNACCAACTAGGNCATTATTCCCCAGGNACCAATCTAGTCAAATACTTC
ATATGCTTGGAATTTTCTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23915.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis