Browse Element(s) Details


Os.23932.1.A1_at

Description gb:AK108082.1
DB_XREF= gi:32993291
TID=Os.23932.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.23932 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-138-G10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-138-G10, full insert sequence.
FL= gb:AK108082.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4014011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g40070OsAffx.4035.1.S1_x_at11/114+23640224..23644135C2 domain-containing protein, putative, expressed
LOC_Os04g40070Os.49734.1.A1_at11/114+23640224..23644135C2 domain-containing protein, putative, expressed
LOC_Os04g40080Os.6250.1.S1_at11/114+23645064..23648120Leucine Rich Repeat family protein, expressed
LOC_Os04g40090Os.49749.1.S1_at11/114+23648459..23652978Zinc finger, ZZ type family protein, expressed
LOC_Os04g40100Os.21022.1.S1_at10/114+23657229..23659836NPH3 family protein, expressed
LOC_Os04g40110OsAffx.26401.1.S1_at11/114+23661918..23662253hypothetical protein
LOC_Os04g40120NANA4+23662749..23663234hypothetical protein
LOC_Os04g40130Os.51821.1.S1_at11/114+23663563..23666129Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os04g40140Os.23932.1.A1_at11/114+23666492..23670448expressed protein
LOC_Os04g40140Os.11595.2.S1_at1/114+23666492..23670448expressed protein
LOC_Os04g40150Os.12301.1.S1_at11/114+23673726..23677378glycosyl transferase family 17 protein, putative, expressed
LOC_Os04g40160OsAffx.26402.1.S1_at11/114+23678469..23682309hypothetical protein
LOC_Os04g40170OsAffx.14214.1.S1_at11/114+23692317..23692953hypothetical protein
LOC_Os04g40180Os.50983.1.S1_at11/114+23693789..23696092expressed protein
LOC_Os04g40190Os.11411.2.S1_a_at11/114+23695137..23697917expressed protein
LOC_Os04g40190Os.27023.1.A1_at10/114+23695137..23697917expressed protein
LOC_Os04g40190Os.46604.1.S1_s_at2/114+23695137..23697917expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0007275biological_processdevelopment
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23932.1.A1_at--59--1071Chr04:23667026..23667050 (25 bp)
AGGGTGTTCTGCTGGAGCGTCAACA
LOC_Os04g40140
Os.23932.1.A1_at--1092--2531Chr04:23666942..23666966 (25 bp)
AACTCTTGATGACACGCTGCCTTTT
LOC_Os04g40140
Os.23932.1.A1_at--678--4771Chr04:23666927..23666951 (25 bp)
GCTGCCTTTTCTTTACACGGACGAA
LOC_Os04g40140
Os.23932.1.A1_at--1040--2551Chr04:23666905..23666927 (23 bp)
AACGGACCTTTTCAGCTGGGAAGAT
LOC_Os04g40140
Os.23932.1.A1_at--1108--10611Chr04:23666765..23666789 (25 bp)
TTCGGGTCGCAGGAAAGCTTCGGCT
LOC_Os04g40140
Os.23932.1.A1_at--478--5791Chr04:23666674..23666698 (25 bp)
GACGCCTTCAGGGTTTAGGGTCTAG
LOC_Os04g40140
Os.23932.1.A1_at--483--10431Chr04:23666660..23666684 (25 bp)
TTAGGGTCTAGGGTTCGCCACTCTA
LOC_Os04g40140
Os.23932.1.A1_at--623--2011Chr04:23666623..23666647 (25 bp)
ACTCTTTTAGAGCTGCAGCGCTTTT
LOC_Os04g40140
Os.23932.1.A1_at--329--6131Chr04:23666578..23666602 (25 bp)
GAGTGGTCAACCCTTCATATAACTG
LOC_Os04g40140
Os.23932.1.A1_at--296--211Chr04:23666530..23666554 (25 bp)
ATTTGCGTATTAACACCAGCTCTAT
LOC_Os04g40140
Os.23932.1.A1_at--246--9791Chr04:23666493..23666517 (25 bp)
TAAGTATAGTAGTCTCTCTTCCCCG
LOC_Os04g40140
Target Sequence 
AGGGTGTTCTGCTGGAGCGTCAACAGCCGGGGACTTCAACGAAGATCTGCTGCAGCGCTGCGAGTTTCCGGAGGACCCCG
TCCCAACTCTTGATGACACGCTGCCTTTTCTTTACACGGACGAAACGGACCTTTTCAGCTGGGAAGATTTTCAATTCGGG
TCGCAGGAAAGCTTCGGCTGGGTGGATGGGGATCACACGTAAGTGATGCTCTGAGGAGTTGTGGGAAGCAGCGGTGCTGC
AGGAAGACGCCTTCAGGGTTTAGGGTCTAGGGTTCGCCACTCTAGTGAGCTGCAACACTCTTTTAGAGCTGCAGCGCTTT
TTATAAGAGTGACGAAATTTGGAGTGGTCAACCCTTCATATAACTGATCTCCGAAAATTTTGTATANGGATTTGCGTATT
AACACCAGCTCTATGTAGCCGAGCAGTAAGTATAGTAGTCTCTCTTCCCCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23932.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis