Browse Element(s) Details

Os.23936.1.S1_at

Description

gb:AK119640.1
DB_XREF= gi:37989263
TID=Os.23936.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.23936 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-130-F07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-130-F07, full insert sequence.
FL= gb:AK111672.1 gb:AK119640.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g01670	11/11	myb family transcription factor, putative, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g01630	Os.22911.1.S1_a_at	11/11	6	+	369096..373968	pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase family protein, expressed
LOC_Os06g01640	Os.49738.1.S1_at	11/11	6	+	374706..381665	Protein arginine N-methyltransferase, putative, expressed
LOC_Os06g01650	Os.22256.2.S1_x_at	11/11	6	+	386223..392012	expressed protein
LOC_Os06g01650	Os.22256.1.S1_at	11/11	6	+	386223..392012	expressed protein
LOC_Os06g01650	Os.22256.2.S1_at	11/11	6	+	386223..392012	expressed protein
LOC_Os06g01650	Os.44933.1.S1_at	3/11	6	+	386223..392012	expressed protein
LOC_Os06g01650	Os.44933.2.S1_x_at	2/11	6	+	386223..392012	expressed protein
LOC_Os06g01650	Os.44933.2.S1_at	2/11	6	+	386223..392012	expressed protein
LOC_Os06g01660	Os.44872.1.S1_at	11/11	6	+	393580..396914	Integral membrane protein DUF6 containing protein, expressed
LOC_Os06g01660	Os.44872.2.S1_x_at	11/11	6	+	393580..396914	Integral membrane protein DUF6 containing protein, expressed
LOC_Os06g01670	Os.23936.1.S1_at	11/11	6	+	397679..402494	myb family transcription factor, putative, expressed
LOC_Os06g01680	Os.9729.3.S1_a_at	11/11	6	+	402739..409270	expressed protein
LOC_Os06g01690	Os.32187.1.S1_at	11/11	6	+	409926..412035	Septum site-determining protein minD, putative, expressed
LOC_Os06g01700	Os.19955.1.S1_at	11/11	6	+	412319..415043	Cwf15/Cwc15 cell cycle control protein, expressed
LOC_Os06g01700	Os.19955.1.S2_at	11/11	6	+	412319..415043	Cwf15/Cwc15 cell cycle control protein, expressed
LOC_Os06g01710	OsAffx.10379.1.A1_at	10/11	6	+	415531..419161	expressed protein
LOC_Os06g01720	Os.50408.1.S1_at	11/11	6	+	419781..424168	expressed protein
LOC_Os06g01730	OsAffx.29607.2.S1_s_at	11/11	6	+	425064..429602	hypothetical protein

Select all/Clear all

Gene Ontology Classification

GO id	Type	Name
GO:0006355	biological_process	regulation of transcription, DNA-dependent
GO:0045449	biological_process	regulation of transcription
GO:0003677	molecular_function	DNA binding
GO:0003700	molecular_function	transcription factor activity

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.23936.1.S1_at--954--819	1	Chr06:398302..398326 (25 bp)	GGAAGGTACTCGCATCACATGGATA	LOC_Os06g01670
Os.23936.1.S1_at--217--589	1	Chr06:398136..398244 (25 bp)	TCATCTCCCATTCATGGTAACGACC	LOC_Os06g01670
Os.23936.1.S1_at--793--783	1	Chr06:398074..398098 (25 bp)	GGTAACAAGCAAACCCTGCTATCAG	LOC_Os06g01670
Os.23936.1.S1_at--194--1017	1	Chr06:398055..398079 (25 bp)	TATCAGCACCCAGTGGCGATTTTGA	LOC_Os06g01670
Os.23936.1.S1_at--728--735	1	Chr06:398030..398054 (25 bp)	GTGAATCCGAAATACCACATTGTGT	LOC_Os06g01670
Os.23936.1.S1_at--866--999	1	Chr06:398005..398029 (25 bp)	TAGCGACATGTTGTACTGTCACGTT	LOC_Os06g01670
Os.23936.1.S1_at--274--681	1	Chr06:397941..397965 (25 bp)	GTTTTGCTCATCATCTAGATGGCCA	LOC_Os06g01670
Os.23936.1.S1_at--890--981	1	Chr06:397868..397892 (25 bp)	TAACTCATCTATGAACCTGCCACAT	LOC_Os06g01670
Os.23936.1.S1_at--973--689	1	Chr06:397830..397854 (25 bp)	GTATCACGGCATATGCATGCCTTTT	LOC_Os06g01670
Os.23936.1.S1_at--302--667	1	Chr06:397772..397796 (25 bp)	GTTGCATGTATTTTTGGCCGTGTAT	LOC_Os06g01670
Os.23936.1.S1_at--911--29	1	Chr06:397719..397743 (25 bp)	ATAGCTGTTTGCACAGGCTAACAAA	LOC_Os06g01670

Target Sequence

GGAAGGTACTCGCATCACATGGATATGGCATGGACCAAGTGAAGCATGAGAATTTAGGGGATCTGGGATCAACTCACACC
CTTCATCTCCCATTCATGGTAACGACCAAATGAAAGAACACCACCACAATCAGCATCCATTGGGGGTAACAAGCAAACCC
TGCTATCAGCACCCAGTGGCGATTTTGAGTGAATCCGAAATACCACATTGTGTTAGCGACATGTTGTACTGTCACGTTGT
ACATATAGCAGTTAGTAATGCTCTAACCATTAGGCTAGTTTTGCTCATCATCTAGATGGCCAGGTAGTTTATGTGCCTGT
GATTTTTTTTTTTTGCCTTTCCTTTTATTTTAACTCATCTATGAACCTGCCACATAGTGGGGTATGTTGTATCACGGCAT
ATGCATGCCTTTTGTTTTTAACCCCCTTTGAGAGTTTGGTACTTTGGTTGCATGTATTTTTGGCCGTGTATGCATATATG
TATATGCGTGTGATTATGNATAGCTGTTTGCACAGGCTAACAAA

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis