Browse Element(s) Details


Os.24003.2.S1_x_at

Description gb:AK106377.1
DB_XREF= gi:32991586
TID=Os.24003.2
CNT=7
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.24003 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-102-D05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-102-D05, full insert sequence.
FL= gb:AK106377.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4057011/11Plant viral-response family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g40540Os.50236.1.S1_at11/1111+23683286..23690006Sugar transporter, putative, expressed
LOC_Os11g40550Os.5625.1.S1_at11/1111+23690789..23693913Receptor kinase, putative, expressed
LOC_Os11g40560OsAffx.19276.1.S1_s_at10/1111+23702300..23703058hypothetical protein
LOC_Os11g40564NANA11+23707094..23708191hypothetical protein
LOC_Os11g40570Os.24003.2.S1_x_at11/1111+23709332..23713269Plant viral-response family protein, expressed
LOC_Os11g40590Os.37812.1.S1_s_at11/1111+23716755..23723090pg1, putative, expressed
LOC_Os11g40590OsAffx.31408.1.S1_x_at11/1111+23716755..23723090pg1, putative, expressed
LOC_Os11g40600Os.49710.1.S1_at10/1111+23725097..23726489expressed protein
LOC_Os11g40610Os.26978.1.S1_a_at11/1111+23729086..23732131early flowering 4, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.24003.2.S1_x_at--303--8451Chr11:23709818..23709842 (25 bp)
TGGCCACGATGCACGCCAAGCACGT
LOC_Os11g40570
Os.24003.2.S1_x_at--841--8011Chr11:23709718..23709742 (25 bp)
GGAGGACACCGCGATCTAAGTGAGC
LOC_Os11g40570
Os.24003.2.S1_x_at--167--4171Chr11:23709660..23709684 (25 bp)
CGCCGTCTTCTTGGATTTGGGTATA
LOC_Os11g40570
Os.24003.2.S1_x_at--595--1191Chr11:23709626..23709650 (25 bp)
AGTAGAGTGCATGTGACACGTGGCA
LOC_Os11g40570
Os.24003.2.S1_x_at--265--8272Chr02:15801749..15801768 (20 bp)
GGCAGTTCAGAGTTCAGAATTCGGA
NONE
Os.24003.2.S1_x_at--651--2591Chr11:23709559..23709583 (25 bp)
AACGATCGAAGAGTAGGAGGCTGCA
LOC_Os11g40570
Os.24003.2.S1_x_at--602--9651Chr11:23709477..23709501 (25 bp)
TCAGTTGCTTGATTGATCCTTTTTG
LOC_Os11g40570
Os.24003.2.S1_x_at--1075--6351Chr11:23709463..23709487 (25 bp)
GATCCTTTTTGTTGTGATTACGTGA
LOC_Os11g40570
Os.24003.2.S1_x_at--741--7931Chr11:23709426..23709450 (25 bp)
GGATTACGATTTTTCCTCTGATCGG
LOC_Os11g40570
Os.24003.2.S1_x_at--1105--5031Chr11:23709400..23709424 (25 bp)
GCAGAGGTTTTGTCTTGTACATCAA
LOC_Os11g40570
Os.24003.2.S1_x_at--453--8631Chr11:23709366..23709390 (25 bp)
TGGGTTATGCATACGACAGCATTAT
LOC_Os11g40570
Target Sequence 
TGGCCACGATGCACGCCAAGCACGTCGCCGCCATGGAGGCGCAGCTCGCCGGCGCCGGCGCCGGCGAGGGGGACAGGTTC
GTCGGCTCTGCGCTGCCGCTGGAGGACACCGCGATCTAAGTGAGCGGGCTCGCCGGCGACGTCGCTGTCCGTCGTCGCCG
CCGTCTTCTTGGATTTGGGTATAGGAAGAGGAAGTAGAGTGCATGTGACACGTGGCAGGGGCAGTTCAGAGTTCAGAATT
CGGAATTTTCAGATCATGAAACGATCGAAGAGTAGGAGGCTGCAGATTAATTGGGATTAACCACAATAGGGGATACAAAA
TTCATGGAAACTTTGATTTGATCAGTTGCTTGATTGATCCTTTTTGTTGTGATTACGTGAGGGTTTATATTTGGATTACG
ATTTTTCCTCTGATCGGNGCAGAGGTTTTGTCTTGTACATCAAATTGGTTANTGGGTTATGCATACGACAGCATTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.24003.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis