Browse Element(s) Details


Os.24073.1.S1_at

Description gb:AK107313.1
DB_XREF= gi:32992522
TID=Os.24073.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.24073 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-126-D10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-126-D10, full insert sequence.
FL= gb:AK107165.1 gb:AK107313.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0703011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g06980Os.27795.1.S1_at11/1111+3459814..3463905BURP domain containing protein, expressed
LOC_Os11g06990OsAffx.9335.2.S1_at11/1111+3468895..3473462expressed protein
LOC_Os11g06990Os.28346.1.S1_x_at4/1111+3468895..3473462expressed protein
LOC_Os11g06990Os.24157.1.A1_at2/1111+3468895..3473462expressed protein
LOC_Os11g06990OsAffx.2425.1.S1_at1/1111+3468895..3473462expressed protein
LOC_Os11g06990Os.46020.1.S1_at1/1111+3468895..3473462expressed protein
LOC_Os11g07000OsAffx.30851.1.S1_at11/1111+3478324..3479769hypothetical protein
LOC_Os11g07010OsAffx.18714.1.S1_at9/1111+3480295..3481145hypothetical protein
LOC_Os11g07020Os.18335.3.S1_x_at11/1111+3484456..3487557Fructose-bisphosphate aldolase, chloroplast precursor, putative, expressed
LOC_Os11g07020Os.7988.1.S1_s_at11/1111+3484456..3487557Fructose-bisphosphate aldolase, chloroplast precursor, putative, expressed
LOC_Os11g07030Os.24073.1.S1_at11/1111+3488365..3490311expressed protein
LOC_Os11g07040Os.5879.1.S1_at11/1111+3491121..3495877Calcium-dependent protein kinase, isoform AK1, putative, expressed
LOC_Os11g07050Os.49214.1.S1_at11/1111+3502731..3508683FHA domain containing protein, expressed
LOC_Os11g07060Os.49831.1.S1_at11/1111+3513705..3518114Leucine Rich Repeat family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.24073.1.S1_at--403--2271Chr11:3488923..3488947 (25 bp)
AAATCTCTGCTGACATGTTACATCG
LOC_Os11g07030
Os.24073.1.S1_at--715--6771Chr11:3488907..3488931 (25 bp)
GTTACATCGCATCACAGACACATTT
LOC_Os11g07030
Os.24073.1.S1_at--209--6771Chr11:3488873..3488897 (25 bp)
GTTACAGTCTAACCCATCCAGTGAA
LOC_Os11g07030
Os.24073.1.S1_at--142--3311Chr11:3488845..3488869 (25 bp)
CACAACCTTGTTAGCATACTCATAT
LOC_Os11g07030
Os.24073.1.S1_at--1027--8031Chr11:3488810..3488834 (25 bp)
GGAGATAATGAACTGGCCTTGGCAT
LOC_Os11g07030
Os.24073.1.S1_at--540--8291Chr11:3488790..3488814 (25 bp)
GGCATTGGTTTCTCACCTGAAGGAT
LOC_Os11g07030
Os.24073.1.S1_at--62--6431Chr11:3488577..3488601 (25 bp)
GATCTTATGTTCAAATGTGCTGCAG
LOC_Os11g07030
Os.24073.1.S1_at--1011--551Chr11:3488536..3488560 (25 bp)
ATCCTTGTGATGCTGAACGTTTTTG
LOC_Os11g07030
Os.24073.1.S1_at--815--7471Chr11:3488512..3488536 (25 bp)
GTGTGGGCGTGATATATTTTCTTCA
LOC_Os11g07030
Os.24073.1.S1_at--897--6731Chr11:3488436..3488460 (25 bp)
GTTCATCCGATTTAAGTAGGCCACA
LOC_Os11g07030
Os.24073.1.S1_at--477--6931Chr11:3488421..3488445 (25 bp)
GTAGGCCACAATTATGCACTTGTAA
LOC_Os11g07030
Target Sequence 
AAATCTCTGCTGACATGTTACATCGCATCACAGACACATTTGTTTACAGAGTTACAGTCTAACCCATCCAGTGAACTACA
CAACCTTGTTAGCATACTCATATTCATGGTTATGGAGATAATGAACTGGCCTTGGCATTGGTTTCTCACCTGAAGGATGG
AAATGGAATACATTTAACTGGNACACAATATGTGCTTCATGCCATGTATTTNACCTNTTGTTTTNAAATATAACAANNTC
ATGTACAGCAGAAAACTAGGTCTTCATACAAATTTACANNCTGNCCTGAACTGATTGAAGAAACCTCANNATGAGCTTTT
GGNATGCTACAAGCCTAAGACANAAATANNACAGATCTTATGTTCAAATGTGCTGCAGAGACAACATGCACTGCATCCTT
GTGATGCTGAACGTTTTTGTGTGGGCGTGATATATTTTCTTCAGAAACATAGCCACNAGGTGTATGTGTGGATGAATTTC
TCCTGAGTTATAGGAGTTCATCCGATTTAAGTAGGCCACAATTATGCACTTGTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.24073.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis