Browse Element(s) Details


Os.24106.2.A1_at

Description gb:AK063166.1
DB_XREF= gi:32973184
TID=Os.24106.2
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.24106 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013089C22, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-109-H06, full insert sequence.
FL= gb:AK063166.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g494809/11GNS1/SUR4 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g49420Os.7742.1.S1_a_at11/113+28077890..28086288HEAT repeat family protein, expressed
LOC_Os03g49430Os.16659.1.S2_at11/113+28088079..28091128Prp18 domain containing protein, expressed
LOC_Os03g49430Os.16659.1.S1_at11/113+28088079..28091128Prp18 domain containing protein, expressed
LOC_Os03g49440Os.5147.1.S1_at11/113+28092272..28095500Phosphatase, putative, expressed
LOC_Os03g49450OsAffx.25642.1.S1_at6/113+28097080..28098412hypothetical protein
LOC_Os03g49464Os.24106.3.S1_at6/113+28101114..28108150pentatricopeptide, putative, expressed
LOC_Os03g49464Os.46481.2.S1_x_at1/113+28101114..28108150pentatricopeptide, putative, expressed
LOC_Os03g49464OsAffx.28164.2.S1_at1/113+28101114..28108150pentatricopeptide, putative, expressed
LOC_Os03g49464Os.52574.2.S1_x_at1/113+28101114..28108150pentatricopeptide, putative, expressed
LOC_Os03g49480Os.24106.2.A1_at9/113+28109221..28110521GNS1/SUR4 family protein, expressed
LOC_Os03g49490Os.16054.1.S1_at10/113+28113985..28116602expressed protein
LOC_Os03g49500Os.1377.1.S1_at11/113+28118991..28123264Ethylene receptor, putative, expressed
LOC_Os03g49510Os.38046.1.S1_s_at10/113+28129401..28135291Phosphatidylinositol-4-phosphate 5-kinase 1 precursor, putative, expressed
LOC_Os03g49520Os.9674.1.S1_at11/113+28135377..28139289pinin/SDK/memA/ protein conserved region containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016021cellular_componentintegral to membrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.24106.2.A1_at--523--1871Chr03:28109892..28109916 (25 bp)
ACGTCGCCATGTACGGCTACTACCT
LOC_Os03g49480
Os.24106.2.A1_at--67--9691Chr03:28109820..28109844 (25 bp)
TCACGGAGCTGCAGATCGCGCAGTT
LOC_Os03g49480
Os.24106.2.A1_at--216--791Chr03:28109570..28109594 (25 bp)
ATGTGATAATCTGTGGGTCTCCGTT
LOC_Os03g49480
Os.24106.2.A1_at--110--371Chr03:28109565..28109589 (25 bp)
ATAATCTGTGGGTCTCCGTTTTCCT
LOC_Os03g49480
Os.24106.2.A1_at--131--6531Chr03:28109507..28109531 (25 bp)
GATTTCATTGTGTTACCAAACAAGA
LOC_Os03g49480
Os.24106.2.A1_at--932--3271Chr03:28109491..28109515 (25 bp)
CAAACAAGACGTTATTGTGCGATAA
LOC_Os03g49480
Os.24106.2.A1_at--780--8691Chr03:28109476..28109500 (25 bp)
TGTGCGATAATCTTGCTTGTCATCT
LOC_Os03g49480
Os.24106.2.A1_at--329--3071Chr03:28109468..28109492 (25 bp)
AATCTTGCTTGTCATCTGGGATCGA
LOC_Os03g49480
Os.24106.2.A1_at--526--8731NONE
TGTCATCTGGGATCGATTTCTTTGC
NONE
Os.24106.2.A1_at--772--511NONE
ATCGATTTCTTTGCTGTCTTCTAGG
NONE
Os.24106.2.A1_at--545--7651Chr03:28109423..28109446 (24 bp)
GGGAGTAATTTCAGCATGAACTTGA
LOC_Os03g49480
Target Sequence 
ACGTCGCCATGTACGGCTACTACCTNTGCTGCAGCCTCGGCCTCCGGTGGCCGCCGCGGTGGAAGCGCGCCGTCACGGAG
CTGCAGATCGCGCAGTTCCTNTTCAGCTTCGCGGCGTCGGCGGTGATGCTGTGGCGGCACTTCGCCGCCGGCGGGTGCGA
GGGGATGGCCGGGTGGGCGTTCAACGCCGTNTTCAACGCGTCGCTGCTCGCGCTNTTCCTCGACTTCCACGGCGCCGCCT
ACGCCGCCGCCAAGGGCAAGAAGAGCAGAAGCGAGGTGGTTAAAGAAGAGTAATGAGGTGATTAATAATCAGAATGCAAG
AAATGTGATAATCTGTGGGTCTCCGTTTTCCTNTAATTTATTGGTTTCCTTTTTTTTTACATCATGATTTCATTGTGTTA
CCAAACAAGACGTTATTGTGCGATAATCTTGCTTGTCATCTGGGATCGATTTCTTTGCTGTCTTCTAGGGGGAGTAATTT
CAGCATGAACTTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.24106.2.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis