Browse Element(s) Details


Os.24106.3.S1_at

Description gb:AK066971.1
DB_XREF= gi:32976989
TID=Os.24106.3
CNT=7
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.24106 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013089C22, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013089C22, full insert sequence.
FL= gb:AK066971.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g494646/11pentatricopeptide, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g49420Os.7742.1.S1_a_at11/113+28077890..28086288HEAT repeat family protein, expressed
LOC_Os03g49430Os.16659.1.S2_at11/113+28088079..28091128Prp18 domain containing protein, expressed
LOC_Os03g49430Os.16659.1.S1_at11/113+28088079..28091128Prp18 domain containing protein, expressed
LOC_Os03g49440Os.5147.1.S1_at11/113+28092272..28095500Phosphatase, putative, expressed
LOC_Os03g49450OsAffx.25642.1.S1_at6/113+28097080..28098412hypothetical protein
LOC_Os03g49464Os.24106.3.S1_at6/113+28101114..28108150pentatricopeptide, putative, expressed
LOC_Os03g49464Os.46481.2.S1_x_at1/113+28101114..28108150pentatricopeptide, putative, expressed
LOC_Os03g49464OsAffx.28164.2.S1_at1/113+28101114..28108150pentatricopeptide, putative, expressed
LOC_Os03g49464Os.52574.2.S1_x_at1/113+28101114..28108150pentatricopeptide, putative, expressed
LOC_Os03g49480Os.24106.2.A1_at9/113+28109221..28110521GNS1/SUR4 family protein, expressed
LOC_Os03g49490Os.16054.1.S1_at10/113+28113985..28116602expressed protein
LOC_Os03g49500Os.1377.1.S1_at11/113+28118991..28123264Ethylene receptor, putative, expressed
LOC_Os03g49510Os.38046.1.S1_s_at10/113+28129401..28135291Phosphatidylinositol-4-phosphate 5-kinase 1 precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.24106.3.S1_at--413--8551Chr03:28107742..28107766 (25 bp)
TGGAGGTGCAAATCTCTTCTTTCCC
LOC_Os03g49464
Os.24106.3.S1_at--174--9751Chr03:28107770..28107794 (25 bp)
TAATTCGCGAGCTGATTGGTGGATC
LOC_Os03g49464
Os.24106.3.S1_at--737--1911Chr03:28107796..28107820 (25 bp)
ACGTGGATTTTCATCCTCTGGTGGA
LOC_Os03g49464
Os.24106.3.S1_at--165--3051Chr03:28107819..28107843 (25 bp)
GAATCGGTCGTCTCGGTTTTTGTGT
LOC_Os03g49464
Os.24106.3.S1_at--835--7771NONE
GGTGCATACTGTGTAGTCTTGATCA
NONE
Os.24106.3.S1_at--831--6831Chr03:28107940..28107964 (25 bp)
GTTTCTTCTATAATTTCCCTGCTTA
LOC_Os03g49464
Os.24106.3.S1_at--1042--6931Chr03:28108008..28108032 (25 bp)
GTAGATTTTCTAGTGGTTTCCTTGA
LOC_Os03g49464
Os.24106.3.S1_at--774--6071NONE
GAGTAGTCTTTCTTGCAACTTTTCC
NONE
Os.24106.3.S1_at--1022--2951Chr03:28108202..28108227 (25 bp)
AATGGTAGTCTTCTTTCCTGGTTCA
NONE
Os.24106.3.S1_at--986--10291Chr03:28108216..28108240 (25 bp)
TTTCCTGGTTCACGCGACACTGAAA
NONE
Os.24106.3.S1_at--614--3691NONE
CTATTTGGCGTCTGCAATGTCCTAA
NONE
Target Sequence 
TGGAGGTGCAAATCTCTTCTTTCCCCCTTAATTCGCGAGCTGATTGGTGGATCTACGTGGATTTTCATCCTCTGGTGGAA
TCGGTCGTCTCGGTTTTTGTGTAAGAAAGGAGAATCATGAGGCCAAGGTGCATACTGTGTAGTCTTGATCAAAGAAAAGC
CATGGCCATGGCCCCCTCTCATGTGAATTTAGTCGAGAGTTTCTTCTATAATTTCCCTGCTTATATATTTCTACTTACAT
TTTTGCTAATGACTCTTGTCAAAAGTGTAGATTTTCTAGTGGTTTCCTTGATCATCAATGGAGAGTAGTCTTTCTTGCAA
CTTTTCCCCTTTTTCTCTTGAAGAAAAATACCNCCTGAGTTATACCNCTTTCTTNATAGGAGTATATAAAAAGGCAGCCT
TNTGCTATTCATCTCNCCGTGTGGCTTCAATAATTATAGAGAAGGTCCCGAAAATGCTGAAATGGTAGTCTTCTTTCCTG
GTTCACGCGACACTGAAATGTGCAATATAGAAAACAANAAAGAAGATCCAGTATACTCCTNCCAATCCATCATTCTTCAT
GACTATTTGGCGTCTGCAATGTCCTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.24106.3.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis