Browse Element(s) Details

Os.24117.1.A1_at

Description

gb:CA761243
DB_XREF= gi:25805282
DB_XREF=BR060003B20F02.ab1
CLONE=BR060003B20F02.ab1
TID=Os.24117.1
CNT=1
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.24117 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g41930	7/11	zinc-binding family protein, putative, expressed
LOC_Os06g50910	1/11	Phosphatidylinositol 3- and 4-kinase family protein, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g41900	OsAffx.22940.1.S1_s_at	11/11	6	+	25132836..25140389	transposon protein, putative, Mutator sub-class
LOC_Os06g41900	OsAffx.22940.2.S1_s_at	11/11	6	+	25132836..25140389	transposon protein, putative, Mutator sub-class
LOC_Os06g41900	OsAffx.22940.5.S1_at	11/11	6	+	25132836..25140389	transposon protein, putative, Mutator sub-class
LOC_Os06g41900	Os.35344.3.S1_x_at	10/11	6	+	25132836..25140389	transposon protein, putative, Mutator sub-class
LOC_Os06g41900	OsAffx.22940.5.S1_x_at	10/11	6	+	25132836..25140389	transposon protein, putative, Mutator sub-class
LOC_Os06g41900	Os.35344.18.S1_x_at	10/11	6	+	25132836..25140389	transposon protein, putative, Mutator sub-class
LOC_Os06g41900	OsAffx.22940.3.S1_x_at	9/11	6	+	25132836..25140389	transposon protein, putative, Mutator sub-class
LOC_Os06g41900	OsAffx.22940.2.S1_at	6/11	6	+	25132836..25140389	transposon protein, putative, Mutator sub-class
LOC_Os06g41900	OsAffx.31552.2.S1_at	1/11	6	+	25132836..25140389	transposon protein, putative, Mutator sub-class
LOC_Os06g41910	Os.57084.1.S1_at	10/11	6	+	25144629..25147011	expressed protein
LOC_Os06g41920	OsAffx.28054.1.S1_s_at	11/11	6	+	25149784..25150239	hypothetical protein
LOC_Os06g41930	Os.17768.1.S1_at	11/11	6	+	25157315..25163617	zinc-binding family protein, putative, expressed
LOC_Os06g41930	Os.24117.1.A1_at	7/11	6	+	25157315..25163617	zinc-binding family protein, putative, expressed
LOC_Os06g41930	OsAffx.2636.1.S1_at	2/11	6	+	25157315..25163617	zinc-binding family protein, putative, expressed
LOC_Os06g41940	Os.56329.1.S1_at	2/11	6	+	25171096..25171896	hypothetical protein
LOC_Os06g41950	OsAffx.28055.1.S1_at	11/11	6	+	25172498..25176364	hypothetical protein
LOC_Os06g41950	Os.52401.1.S1_at	1/11	6	+	25172498..25176364	hypothetical protein
LOC_Os06g41960	OsAffx.28056.1.S1_at	11/11	6	+	25182038..25183930	Protein kinase domain containing protein
LOC_Os06g41970	NA	NA	6	+	25186717..25189956	retrotransposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification

GO id	Type	Name
GO:0007004	biological_process	telomerase-dependent telomere maintenance
GO:0009793	biological_process	embryonic development (sensu Magnoliophyta)
GO:0043247	biological_process	telomere maintenance in response to DNA damage
GO:0004428	molecular_function	inositol or phosphatidylinositol kinase activity
GO:0005488	molecular_function	binding
GO:0016303	molecular_function	phosphatidylinositol 3-kinase activity

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.24117.1.A1_at--798--331	1	Chr06:30802801..30802824 (24 bp)	CACATTTGCACTGGCATTCTGGCAA	LOC_Os06g50910
Os.24117.1.A1_at--561--543	1	NONE	GAACCAGGGCTTGCTTGCACCGTAA	NONE
Os.24117.1.A1_at--162--377	1	Chr06:25159646..25159670 (25 bp)	CTCTTTTTATCTCCTTTTGCACTTG	LOC_Os06g41930
Os.24117.1.A1_at--766--433	1	Chr06:25159700..25159724 (25 bp)	CCATGGAATCGGTAGGTCCCAATTA	LOC_Os06g41930
Os.24117.1.A1_at--77--725	1	Chr06:25159715..25159739 (25 bp)	GTCCCAATTATTGCCCTCTGAAAAT	LOC_Os06g41930
Os.24117.1.A1_at--668--661	1	Chr06:25159748..25159772 (25 bp)	GTTGGTACGTGTGCAGCCGTTGAAT	LOC_Os06g41930
Os.24117.1.A1_at--86--1045	1	NONE	TTAGGCTTAGCCCATTGTTCGTCCA	NONE
Os.24117.1.A1_at--751--1011	1	NONE	TATGTACTTCATCTCCAAATCGTGG	NONE
Os.24117.1.A1_at--277--429	1	Chr06:25159993..25160017 (25 bp)	TAGCCTTTTAACCATAGTACGTCCT	LOC_Os06g41930
Os.24117.1.A1_at--927--699	1	Chr06:25160009..25160033 (25 bp)	GTACGTCCTACATTTAGCATGGGTT	LOC_Os06g41930
Os.24117.1.A1_at--563--767	1	Chr06:25160029..25160053 (25 bp)	GGGTTGATTCGTCAATCACCCAATC	LOC_Os06g41930

Target Sequence

CACATTTGCACTGGCATTCTGGCAATTGACTTTNTGAGCTGACAAAACTAAGGTTATCAATCAGGTTTATGATACAGCAA
AATGTGCAGAACCAGGGCTTGCTTGCACCGTAATGCAAGTTTATTAGGAAATCCCTGATTAATTCTCTTTTTATCTCCTT
TTGCACTTGAAGGGTGCAACAAGCTAATGAGACATTCTCCATGGAATCGGTAGGTCCCAATTATTGCCCTCTGAAAATTG
GGGCGTGTTGGTACGTGTGCAGCCGTTGAATGCAGCTAAAATGGGGCCCCGTATCTATCTCCTATTCTTAGGCTTAGCCC
ATTGTTCGTCCATTTCCATCAAGACTTCTTTTGCTGCTGCTGCAAATAGATCAAGCCAGCCATATATGGAAGATTATGCA
TTTAGTATATAACTTAATTGCCAGAAAAGAGTGCATTTAGTAGAGGATGGTATATGTACTTCATCTCCAAATCGTGGTTT
ACTTAATTAATTAGCCTTTTAACCATAGTACGTCCTACATTTAGCATGGGTTGATTCGTCAATCACCCAATC

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis