Browse Element(s) Details


Os.24157.1.A1_at

Description gb:CA761319
DB_XREF= gi:25805358
DB_XREF=BR060004B10G08.ab1
CLONE=BR060004B10G08.ab1
TID=Os.24157.1
CNT=1
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.24157 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g069902/11expressed protein
LOC_Os08g307101/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g06960Os.53842.1.S1_x_at1/1111+3448504..3452746retrotransposon protein, putative, unclassified
LOC_Os11g06970NANA11+3454730..3455188retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g06980Os.27795.1.S1_at11/1111+3459814..3463905BURP domain containing protein, expressed
LOC_Os11g06990OsAffx.9335.2.S1_at11/1111+3468895..3473462expressed protein
LOC_Os11g06990Os.28346.1.S1_x_at4/1111+3468895..3473462expressed protein
LOC_Os11g06990Os.24157.1.A1_at2/1111+3468895..3473462expressed protein
LOC_Os11g06990OsAffx.2425.1.S1_at1/1111+3468895..3473462expressed protein
LOC_Os11g06990Os.46020.1.S1_at1/1111+3468895..3473462expressed protein
LOC_Os11g07000OsAffx.30851.1.S1_at11/1111+3478324..3479769hypothetical protein
LOC_Os11g07010OsAffx.18714.1.S1_at9/1111+3480295..3481145hypothetical protein
LOC_Os11g07020Os.18335.3.S1_x_at11/1111+3484456..3487557Fructose-bisphosphate aldolase, chloroplast precursor, putative, expressed
LOC_Os11g07020Os.7988.1.S1_s_at11/1111+3484456..3487557Fructose-bisphosphate aldolase, chloroplast precursor, putative, expressed
LOC_Os11g07030Os.24073.1.S1_at11/1111+3488365..3490311expressed protein
LOC_Os11g07040Os.5879.1.S1_at11/1111+3491121..3495877Calcium-dependent protein kinase, isoform AK1, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.24157.1.A1_at--479--1351Chr12:15261299..15261323 (25 bp)
AGAGAGTTTTGGTGTGTTTGCCTGA
NONE
Os.24157.1.A1_at--310--1351Chr12:15261297..15261321 (25 bp)
AGAGTTTTGGTGTGTTTGCCTGAGA
NONE
Os.24157.1.A1_at--415--10413Chr12:15261293..15261317 (25 bp)
TTTTGGTGTGTTTGCCTGAGAGGCT
NONE
Os.24157.1.A1_at--422--10254Chr12:15261292..15261316 (25 bp)
TTTGGTGTGTTTGCCTGAGAGGCTT
NONE
Os.24157.1.A1_at--369--8771Chr12:15261243..15261267 (25 bp)
TGTTTGCCCGAGAGGTTTTCTGTTT
NONE
Os.24157.1.A1_at--171--10291Chr12:15261241..15261265 (25 bp)
TTTGCCCGAGAGGTTTTCTGTTTGA
NONE
Os.24157.1.A1_at--392--4531Chr12:15261238..15261262 (25 bp)
GCCCGAGAGGTTTTCTGTTTGAGTT
NONE
Os.24157.1.A1_at--534--4031Chr12:15261235..15261259 (25 bp)
CGAGAGGTTTTCTGTTTGAGTTAAT
NONE
Os.24157.1.A1_at--746--6791Chr12:15261229..15261253 (25 bp)
GTTTTCTGTTTGAGTTAATGTTCCT
NONE
Os.24157.1.A1_at--949--10592Chr05:8115739..8115758 (20 bp)
TTCTGTTTGAGTTAATGTTCCTCTA
NONE
Os.24157.1.A1_at--388--8751NONE
TGTTTGAGTTAATGTTCCTCTAAAG
NONE
Target Sequence 
AGAGAGTTTTGGTGTGTTTGCCTGAGAGGCTTTTGTATTAGGATTAGTTTAGAGTGTGTTTGCCCGAGAGGTTTTCTGTT
TGAGTTAATGTTCCTCTAAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.24157.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis