Browse Element(s) Details


Os.24294.1.A1_at

Description gb:CB638051
DB_XREF= gi:29633042
DB_XREF=OSJNEa05O06.r
CLONE=OSJNEa05O06
TID=Os.24294.1
CNT=4
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.24294 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_191813.1 (A.thaliana) putative protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g2872011/11pentatricopeptide, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g28680OsAffx.20387.1.S1_x_at2/115+16740304..16746018retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g28690OsAffx.4459.1.S1_at11/115+16749313..16750966hypothetical protein
LOC_Os05g28700NANA5+16751664..16754297retrotransposon protein, putative, unclassified
LOC_Os05g28710Os.9610.1.S1_s_at11/115+16754545..16758942expressed protein
LOC_Os05g28720Os.24294.1.A1_at11/115+16764919..16767041pentatricopeptide, putative, expressed
LOC_Os05g28730Os.22596.1.S1_s_at10/115+16769917..16772537Zinc finger, C3HC4 type family protein, expressed
LOC_Os05g28740Os.22312.3.A1_a_at11/115+16778701..16779979universal stress protein family protein, expressed
LOC_Os05g28750Os.1082.1.S1_a_at10/115+16780717..1678171460S ribosomal protein L29, putative
LOC_Os05g28750Os.1082.1.S1_x_at3/115+16780717..1678171460S ribosomal protein L29, putative
LOC_Os05g28750Os.1082.1.S1_at2/115+16780717..1678171460S ribosomal protein L29, putative
LOC_Os05g28760NANA5+16782416..16782751hypothetical protein
LOC_Os05g28770OsAffx.27066.1.S1_at11/115+16787445..16791387expressed protein
LOC_Os05g28770OsAffx.26361.1.S1_x_at1/115+16787445..16791387expressed protein
LOC_Os05g28770OsAffx.26361.1.S1_at1/115+16787445..16791387expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.24294.1.A1_at--72--7951Chr05:16766507..16766531 (25 bp)
GGATTTGTCCAGATGTGAACTCTTA
LOC_Os05g28720
Os.24294.1.A1_at--219--8271Chr05:16766549..16766573 (25 bp)
GGCATATACGACATGGTAGACCTGA
LOC_Os05g28720
Os.24294.1.A1_at--371--5371Chr05:16766616..16766640 (25 bp)
GAAGACTCCACAGATAGACTACAAT
LOC_Os05g28720
Os.24294.1.A1_at--1028--4751Chr05:16766647..16766671 (25 bp)
GCTGCAGATTTCTCCAAGGCTGGGA
LOC_Os05g28720
Os.24294.1.A1_at--1051--8331Chr05:16766664..16766688 (25 bp)
GGCTGGGAAGCCTGACATATTGTAT
LOC_Os05g28720
Os.24294.1.A1_at--73--2991Chr05:16766734..16766758 (25 bp)
AATGTGTTCCACCAGTGGGCAGAGA
LOC_Os05g28720
Os.24294.1.A1_at--771--2351Chr05:16766766..16766790 (25 bp)
AAAACGTGTCAAGAGGAATGTCCCT
LOC_Os05g28720
Os.24294.1.A1_at--746--5271Chr05:16766781..16766805 (25 bp)
GAATGTCCCTAATCAGACTGAGAGC
LOC_Os05g28720
Os.24294.1.A1_at--237--9791Chr05:16766815..16766839 (25 bp)
TAAGATTACCATTTGCCAGCAGAAA
LOC_Os05g28720
Os.24294.1.A1_at--678--7511Chr05:16766841..16766865 (25 bp)
GTGGATCTCTTTGATGGTGGCTGAA
LOC_Os05g28720
Os.24294.1.A1_at--57--3131Chr05:16766865..16766889 (25 bp)
AATTTGAGGTGTTGCTCCTGCTTTT
LOC_Os05g28720
Target Sequence 
GGATTTGTCCAGATGTGAACTCTTACACAGTGTTTATTAATGGGCATATACGACATGGTAGACCTGAGGAGGCATGTAAA
TACATTGAAGAGATGATCCAAAAAGGGATGAAGACTCCACAGATAGACTACAATAAGTTTGCTGCAGATTTCTCCAAGGC
TGGGAAGCCTGACATATTGTATGAATTGGCTCAGAAGGTGAAGTTTACAGGTAAATTTGATGCGTNTAATGTGTTCCACC
AGTGGGCAGAGAGAATGAAAAAACGTGTCAAGAGGAATGTCCCTAATCAGACTGAGAGCAGGACGTTTTAAGATTACCAT
TTGCCAGCAGAAATGTGGATCTCTTTGATGGTGGCTGAAATTTGAGGTGTTGCTCCTGCTTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.24294.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis