Browse Element(s) Details

Os.24334.1.A1_at

Description

gb:AK121021.1
DB_XREF= gi:37990644
TID=Os.24334.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.24334 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023049E24, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023049E24, full insert sequence.
FL= gb:AK121021.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g20410	11/11	BAH domain containing protein, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g20370	Os.12198.1.S1_a_at	11/11	6	+	11695841..11700294	microtubule-associated protein MAP65-1a, putative, expressed
LOC_Os06g20370	Os.12198.1.S1_at	11/11	6	+	11695841..11700294	microtubule-associated protein MAP65-1a, putative, expressed
LOC_Os06g20370	Os.12198.2.S1_x_at	10/11	6	+	11695841..11700294	microtubule-associated protein MAP65-1a, putative, expressed
LOC_Os06g20370	OsAffx.13408.1.S1_at	1/11	6	+	11695841..11700294	microtubule-associated protein MAP65-1a, putative, expressed
LOC_Os06g20380	OsAffx.15516.1.S1_at	9/11	6	+	11703388..11705017	hypothetical protein
LOC_Os06g20380	Os.42235.1.S1_at	1/11	6	+	11703388..11705017	hypothetical protein
LOC_Os06g20390	Os.5637.1.S1_at	10/11	6	+	11711593..11716063	expressed protein
LOC_Os06g20400	Os.18614.1.S1_at	11/11	6	+	11718035..11721859	DHHC zinc finger domain containing protein, expressed
LOC_Os06g20400	OsAffx.15517.1.S1_s_at	11/11	6	+	11718035..11721859	DHHC zinc finger domain containing protein, expressed
LOC_Os06g20400	OsAffx.15517.1.S1_at	10/11	6	+	11718035..11721859	DHHC zinc finger domain containing protein, expressed
LOC_Os06g20410	Os.24334.1.A1_at	11/11	6	+	11724807..11733595	BAH domain containing protein, expressed
LOC_Os06g20420	OsAffx.27734.1.S1_at	11/11	6	+	11733894..11734334	hypothetical protein
LOC_Os06g20430	Os.7081.1.S1_at	11/11	6	+	11736127..11740014	LBP/BPI / CETP family, N-terminal domain containing protein, expressed
LOC_Os06g20440	NA	NA	6	+	11741657..11745430	transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os06g20450	OsAffx.27736.1.S1_at	11/11	6	+	11746557..11746873	hypothetical protein
LOC_Os06g20460	OsAffx.14902.1.A1_at	1/11	6	+	11748072..11749772	retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g20470	NA	NA	6	+	11751948..11752271	hypothetical protein

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Gene Ontology Classification

GO id	Type	Name
GO:0006355	biological_process	regulation of transcription, DNA-dependent
GO:0003677	molecular_function	DNA binding

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.24334.1.A1_at--123--63	1	Chr06:11725290..11725314 (25 bp)	ATGCTAGTATCAGCTGTTTTGCCTA	LOC_Os06g20410
Os.24334.1.A1_at--655--863	1	Chr06:11725250..11725274 (25 bp)	TGGGAAGAAAGCTACACCCCTTGGA	LOC_Os06g20410
Os.24334.1.A1_at--1134--135	1	Chr06:11725206..11725230 (25 bp)	AGAGCAGCGAGTCCATGTTCCTTCA	LOC_Os06g20410
Os.24334.1.A1_at--555--837	1	Chr06:11725181..11725205 (25 bp)	GGCGTTCATTACCTGTGCAAATCTT	LOC_Os06g20410
Os.24334.1.A1_at--496--513	1	Chr06:11725165..11725189 (25 bp)	GCAAATCTTCGCTGCTTTAATTAGG	LOC_Os06g20410
Os.24334.1.A1_at--352--1041	1	Chr06:11725145..11725169 (25 bp)	TTAGGTTCACCCTTCTTAACAGAGT	LOC_Os06g20410
Os.24334.1.A1_at--771--749	1	Chr06:11725119..11725143 (25 bp)	GTGGTGAGGCTCGTTACAGTCAAAA	LOC_Os06g20410
Os.24334.1.A1_at--218--921	1	Chr06:11725055..11725079 (25 bp)	TCCAATCCAAACGTTCCTCTGTAAA	LOC_Os06g20410
Os.24334.1.A1_at--3--239	1	Chr06:11725032..11725056 (25 bp)	AAACTTCTCTCAGCGGTTTACTTGC	LOC_Os06g20410
Os.24334.1.A1_at--780--1037	1	Chr06:11724956..11724980 (25 bp)	TTTTCCGTAGTTCGCATTGTATAGG	LOC_Os06g20410
Os.24334.1.A1_at--946--119	1	Chr06:11724889..11724913 (25 bp)	AGTATAAAATCTACCTCCACTCCTA	LOC_Os06g20410

Target Sequence

ATGCTAGTATCAGCTGTTTTGCCTAGATGTTTAAACGAAGTGGGAAGAAAGCTACACCCCTTGGAAAAATTTTATGCAAG
TTGGAGAGCAGCGAGTCCATGTTCCTTCAGGCGTTCATTACCTGTGCAAATCTTCGCTGCTTTAATTAGGTTCACCCTTC
TTAACAGAGTAGTGGTGAGGCTCGTTACAGTCAAAATCTATGCGTGAAACTTTATACACGTGTTTGATGCAAACATCCAA
TCCAAACGTTCCTCTGTAAAACTTCTCTCAGCGGTTTACTTGCCGTTCTTTCTTTCCGTCTTTCTTTCTTTACTTGACAT
TCTTTCTTTCACCCTTTTCCGTAGTTCGCATTGTATAGGTGGCATAATGGTAGTCATGTATTTATATATTCCTAATATTG
CAGTATAAAATCTACCTCCACTCCTA

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis