Browse Element(s) Details


Os.24364.1.A1_s_at

Description gb:CR285414
DB_XREF= gi:44671980
DB_XREF=CR285414
CLONE=p631g10p3
TID=Os.24364.1
CNT=3
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.24364 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_027543.1 (A.thaliana) expressed protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5186011/11dehydration-responsive protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g51810Os.52928.1.S1_at11/112+31733624..31741499chloroplast outer membrane translocon subunit, putative, expressed
LOC_Os02g51820Os.30724.2.S1_at11/112+31741843..31743657expressed protein
LOC_Os02g51830Os.30724.1.S1_at11/112+31743490..31748587histidyl-tRNA synthetase family protein, expressed
LOC_Os02g51840OsAffx.24829.1.S1_at11/112+31748793..31752491expressed protein
LOC_Os02g51840Os.17938.1.A1_s_at11/112+31748793..31752491expressed protein
LOC_Os02g51840Os.17938.1.A1_at6/112+31748793..31752491expressed protein
LOC_Os02g51850Os.22612.1.A1_at11/112+31753149..31755693adenosine 5'-phosphosulfate reductase 3, putative, expressed
LOC_Os02g51860Os.24364.1.A1_s_at11/112+31757510..31762862dehydration-responsive protein, putative, expressed
LOC_Os02g51860OsAffx.12602.1.S1_at10/112+31757510..31762862dehydration-responsive protein, putative, expressed
LOC_Os02g51870OsAffx.12603.1.S1_at11/112+31764824..31765393hypothetical protein
LOC_Os02g51880Os.53073.1.S1_at11/112+31767487..31770532amine oxidase family protein, putative, expressed
LOC_Os02g51890Os.10870.1.S1_at11/112+31775709..31781275RNA recognition motif family protein, expressed
LOC_Os02g51900Os.52310.1.S1_at11/112+31781479..31783150Cytokinin-O-glucosyltransferase 2, putative, expressed
LOC_Os02g51910Os.18839.1.S2_at11/112+31785141..31787932Cytokinin-O-glucosyltransferase 2, putative, expressed
LOC_Os02g51910Os.18839.1.S1_at11/112+31785141..31787932Cytokinin-O-glucosyltransferase 2, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.24364.1.A1_s_at--333--9651Chr02:31757721..31757745 (25 bp)
TCAGTTTCAACACTAGAGGCATGGT
LOC_Os02g51860
Os.24364.1.A1_s_at--215--6211Chr02:31757706..31757730 (25 bp)
GAGGCATGGTCAGCTAACTCGTCAT
LOC_Os02g51860
Os.24364.1.A1_s_at--196--2551Chr02:31757691..31757715 (25 bp)
AACTCGTCATGCATCGTCATGGAAC
LOC_Os02g51860
Os.24364.1.A1_s_at--217--1031Chr02:31757662..31757686 (25 bp)
AGGTGCCATTGGACTGATCGGACAA
LOC_Os02g51860
Os.24364.1.A1_s_at--666--1971Chr02:31757650..31757674 (25 bp)
ACTGATCGGACAAGTGCGTGCTGCA
LOC_Os02g51860
Os.24364.1.A1_s_at--1150--2211Chr02:31757641..31757665 (25 bp)
ACAAGTGCGTGCTGCAGAGAGGCCT
LOC_Os02g51860
Os.24364.1.A1_s_at--301--1351Chr02:31757626..31757650 (25 bp)
AGAGAGGCCTGGTAGCTAAGCTTTC
LOC_Os02g51860
Os.24364.1.A1_s_at--281--9991Chr02:31757614..31757638 (25 bp)
TAGCTAAGCTTTCCAGGCCGAGGTT
LOC_Os02g51860
Os.24364.1.A1_s_at--827--4491Chr02:31757598..31757622 (25 bp)
GCCGAGGTTTTATTGCCAGGGTACA
LOC_Os02g51860
Os.24364.1.A1_s_at--687--3471Chr02:31757582..31757606 (25 bp)
CAGGGTACAGAGATGAAGCCTTCAA
LOC_Os02g51860
Os.24364.1.A1_s_at--834--4771Chr02:31757511..31757535 (25 bp)
GCTGCGGTGTACATAATCGCGGCCA
LOC_Os02g51860
Target Sequence 
TCAGTTTCAACACTAGAGGCATGGTCAGCTAACTCGTCATGCATCGTCATGGAACCGCNAGGTGCCATTGGACTGATCGG
ACAAGTGCGTGCTGCAGAGAGGCCTGGTAGCTAAGCTTTCCAGGCCGAGGTTTTATTGCCAGGGTACAGAGATGAAGCCT
TCAAAGTTATTTGAGTAGCNCAAAGACTATATATTCAATAAAGGGATGATGCTGCGGTGTACATAATCGCGGCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.24364.1.A1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis