Browse Element(s) Details


Os.24548.1.A1_at

Description gb:AK111491.1
DB_XREF= gi:37988154
TID=Os.24548.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.24548 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013000B05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013000B05, full insert sequence.
FL= gb:AK111491.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0748011/11Transglycosylase SLT domain PF|01464 containing protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g07420Os.55262.1.S1_at11/112+3830522..3832332expressed protein
LOC_Os02g07420Os.55262.1.S1_x_at11/112+3830522..3832332expressed protein
LOC_Os02g07430Os.56165.1.S1_at11/112+3833127..3837132MADS-box protein ZMM17, putative, expressed
LOC_Os02g07440OsAffx.2537.1.S1_at11/112+3843535..3843984hypothetical protein
LOC_Os02g07450Os.10876.1.S1_at11/112+3846200..3850113Nuclear transcription factor Y subunit gamma, putative, expressed
LOC_Os02g07460NANA2+3853274..3853732expressed protein
LOC_Os02g07480Os.24548.1.A1_at11/112+3855963..3863869Transglycosylase SLT domain PF|01464 containing protein, putative, expressed
LOC_Os02g07480Os.52209.1.S1_at11/112+3855963..3863869Transglycosylase SLT domain PF|01464 containing protein, putative, expressed
LOC_Os02g07470OsAffx.11928.1.S1_at11/112+3863744..3864874hypothetical protein
LOC_Os02g07490Os.48052.1.S1_at11/112+3868112..3872942Glyceraldehyde-3-phosphate dehydrogenase, cytosolic, putative, expressed
LOC_Os02g07500OsAffx.8801.1.S1_at1/112+3879912..3882999hypothetical protein
LOC_Os02g07510NANA2+3886548..3888154hypothetical protein
LOC_Os02g07520OsAffx.22699.1.S1_x_at2/112+3888538..3895439retrotransposon protein, putative, unclassified
LOC_Os02g07520Os.45161.1.A1_x_at1/112+3888538..3895439retrotransposon protein, putative, unclassified
LOC_Os02g07520OsAffx.16451.1.A1_x_at1/112+3888538..3895439retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.24548.1.A1_at--477--6071Chr02:3858060..3858084 (25 bp)
GAGTTCATTGTTCAGGCATACCTTG
LOC_Os02g07480
Os.24548.1.A1_at--365--2591Chr02:3858024..3858048 (25 bp)
AACGTTAGCCTTCAGGAGACTGGCC
LOC_Os02g07480
Os.24548.1.A1_at--1016--5971Chr02:3858009..3858033 (25 bp)
GAGACTGGCCCATTTTGGAACAAAT
LOC_Os02g07480
Os.24548.1.A1_at--1072--51Chr02:3857986..3858010 (25 bp)
ATTCCTGGAGGCCTTAAGACTATAC
LOC_Os02g07480
Os.24548.1.A1_at--841--2431Chr02:3857658..3857682 (25 bp)
AAAAGTTGTCCTGATGTGCCCTTAT
LOC_Os02g07480
Os.24548.1.A1_at--462--9171Chr02:3857642..3857666 (25 bp)
TGCCCTTATGTCTTTGTTTGGTGAA
LOC_Os02g07480
Os.24548.1.A1_at--631--5291Chr02:3856353..3856375 (23 bp)
GAAGGCTCCCACTCAAAGGATTCAA
LOC_Os02g07480
Os.24548.1.A1_at--241--5151Chr02:3856319..3856343 (25 bp)
GCAACGGGCTTGCTTGGATTCCATT
LOC_Os02g07480
Os.24548.1.A1_at--946--211Chr02:3856287..3856311 (25 bp)
ATTTGGTCATTTGATACCCTGCTCG
LOC_Os02g07480
Os.24548.1.A1_at--572--9071Chr02:3856268..3856292 (25 bp)
TGCTCGTGTTCCAGTTTTCAACTGT
LOC_Os02g07480
Os.24548.1.A1_at--298--2571Chr02:3856249..3856273 (25 bp)
AACTGTGGTTGATCCCCACTGGGTG
LOC_Os02g07480
Target Sequence 
GAGTTCATTGTTCAGGCATACCTTGGGGGACCAGAAAACGTTAGCCTTCAGGAGACTGGCCCATTTTGGAACAAATTCCT
GGAGGCCTTAAGACTATACCAAGATCCAAAGAAGGAACAAGCAAGCTGTTGTATTTTGTAAAAGTTGTCCTGATGTGCCC
TTATGTCTTTGTTTGGTGAAGGCTCCCACTCAAAGGATTCAACGCTAACTAGCAACGGGCTTGCTTGGATTCCATTTGTA
CATATTTGGTCATTTGATACCCTGCTCGTGTTCCAGTTTTCAACTGTGGTTGATCCCCACTGGGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.24548.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis