Browse Element(s) Details


Os.24564.1.A1_at

Description gb:AK102130.1
DB_XREF= gi:32987339
TID=Os.24564.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.24564 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033085C09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033085C09, full insert sequence.
FL= gb:AK102130.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g2455011/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g24530OsAffx.7687.1.S1_at11/1112+14007356..14007994Zinc finger, C3HC4 type family protein
LOC_Os12g24540OsAffx.7688.1.S1_at11/1112+14010291..14016381PHD-finger family protein, expressed
LOC_Os12g24540Os.50817.1.S1_x_at11/1112+14010291..14016381PHD-finger family protein, expressed
LOC_Os12g24540Os.50817.1.S1_at11/1112+14010291..14016381PHD-finger family protein, expressed
LOC_Os12g24540Os.23856.1.A1_s_at11/1112+14010291..14016381PHD-finger family protein, expressed
LOC_Os12g24550Os.24564.1.A1_at11/1112+14024035..14034693Protein kinase domain containing protein, expressed
LOC_Os12g24580OsAffx.19804.1.S1_at5/1112+14051620..14054147negatively light-regulated protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009409biological_processresponse to cold
GO:0009651biological_processresponse to salt stress
GO:0004672molecular_functionprotein kinase activity
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.24564.1.A1_at--938--2511Chr12:14024949..14024973 (25 bp)
AACTTAGACGGTCCATTCCTCAACT
LOC_Os12g24550
Os.24564.1.A1_at--794--1571Chr12:14024919..14024943 (25 bp)
AGCTACTTCTTGCACCTGAGGAGGA
LOC_Os12g24550
Os.24564.1.A1_at--1072--3011Chr12:14024881..14024905 (25 bp)
AATGCTGCAGGAGCGTTGAGTAACC
LOC_Os12g24550
Os.24564.1.A1_at--676--8171Chr12:14024850..14024874 (25 bp)
GGAACTCTAACATACTCTGTGAAGA
LOC_Os12g24550
Os.24564.1.A1_at--22--5351Chr12:14024830..14024854 (25 bp)
GAAGATATTGTCTCCCAGGGCGCAA
LOC_Os12g24550
Os.24564.1.A1_at--546--9631Chr12:14024440..14024463 (24 bp)
TCAGGCCCTGCTGAAGATGGTCAGT
LOC_Os12g24550
Os.24564.1.A1_at--604--1311Chr12:14024426..14024450 (25 bp)
AGATGGTCAGTAGCTACTCCACCGT
LOC_Os12g24550
Os.24564.1.A1_at--107--8931Chr12:14024396..14024420 (25 bp)
TGAGCCCCAGCAGGAAAGACGTGCT
LOC_Os12g24550
Os.24564.1.A1_at--160--2771Chr12:14024381..14024405 (25 bp)
AAGACGTGCTAACAGAATCTCCGCT
LOC_Os12g24550
Os.24564.1.A1_at--540--3411Chr12:14024369..14024393 (25 bp)
CAGAATCTCCGCTGAAGATCGTGCT
LOC_Os12g24550
Os.24564.1.A1_at--746--7811Chr12:14024275..14024299 (25 bp)
GGTCATCGTGCACCTGAGGCAATCG
LOC_Os12g24550
Target Sequence 
AACTTAGACGGTCCATTCCTCAACTCACCAAGCTACTTCTTGCACCTGAGGAGGATAAAACCANGGGCAATGCTGCAGGA
GCGTTGAGTAACCTAGTGAGGAACTCTAACATACTCTGTGAAGATATTGTCTCCCAGGGCGCAATTCAGGCCCTGCTGAA
GATGGTCAGTAGCTACTCCACCGTGGCTNTGAGCCCCAGCAGGAAAGACGTGCTAACAGAATCTCCGCTGAAGATCGTGC
TNTTCGCGCTGCGCAAGATGTGCGACCACGCCGCCTGCCGGCTCTTCCTCCGATCGTNGGAGCTGCTCCCGGTCATCGTG
CACCTGAGGCAATCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.24564.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis