Browse Element(s) Details


Os.24644.1.S1_at

Description gb:CA762290
DB_XREF= gi:25806329
DB_XREF=BR060001000G10.ab1
CLONE=BR060001000G10.ab1
TID=Os.24644.1
CNT=2
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.24644 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein pir:T47840 (A.thaliana) T47840 multi resistance protein homolog - Arabidopsis thaliana
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g498909/11ABC transporter family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g49860OsAffx.14350.1.S1_at11/114+29500458..29510657DNA replication helicase, putative, expressed
LOC_Os04g49870OsAffx.3052.1.S1_at11/114+29511727..29513397Poly polymerase central domain containing protein
LOC_Os04g49870Os.29800.1.S1_x_at2/114+29511727..29513397Poly polymerase central domain containing protein
LOC_Os04g49880OsAffx.14351.1.S1_x_at11/114+29520965..29521246hypothetical protein
LOC_Os04g49890Os.27657.1.A1_at11/114+29523656..29531150ABC transporter family protein, expressed
LOC_Os04g49890Os.24644.1.S1_at9/114+29523656..29531150ABC transporter family protein, expressed
LOC_Os04g49900Os.20283.1.S1_at9/114+29535851..29543031ABC transporter family protein, expressed
LOC_Os04g49910Os.45957.4.S1_x_at5/114+29545697..29550504retrotransposon protein, putative, unclassified
LOC_Os04g49910Os.45957.3.S1_x_at2/114+29545697..29550504retrotransposon protein, putative, unclassified
LOC_Os04g49920OsAffx.26670.2.S1_at11/114+29551081..29554672hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0042626molecular_functionATPase activity, coupled to transmembrane movement of substances
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.24644.1.S1_at--704--6851Chr04:29524875..29524899 (25 bp)
GTTTGTTGCCTGCTTAACTTAGCAA
LOC_Os04g49890
Os.24644.1.S1_at--101--3111Chr04:29524954..29524978 (25 bp)
AATATCCAGCATTTGTTCTAGGTGA
LOC_Os04g49890
Os.24644.1.S1_at--651--2871Chr04:29524979..29525003 (25 bp)
AAGTGTGCAGGTGCTATCCTGGATA
LOC_Os04g49890
Os.24644.1.S1_at--1119--5771NONE
GACGAAATCCGCAAAGCTTCCGCTT
NONE
Os.24644.1.S1_at--578--1551NONE
AGCTTCCGCTTAATTCGAGCATGGT
NONE
Os.24644.1.S1_at--479--4351Chr04:29525105..29525129 (25 bp)
CCAGTGTGGTATTTGATCTCAGGTC
LOC_Os04g49890
Os.24644.1.S1_at--931--3471Chr04:29525124..29525148 (25 bp)
CAGGTCTATTTTACTCGATCATGAA
LOC_Os04g49890
Os.24644.1.S1_at--967--2291Chr04:29525164..29525188 (25 bp)
AAATGGATTAACCTGTTCATGCTTG
LOC_Os04g49890
Os.24644.1.S1_at--593--3651Chr04:29525200..29525224 (25 bp)
CTTCTATTTGTAATTTCCGCCAGGG
LOC_Os04g49890
Os.24644.1.S1_at--939--5231Chr04:29525234..29525258 (25 bp)
GAATCACCCTTGTAGATAACAGCAT
LOC_Os04g49890
Os.24644.1.S1_at--1050--3411Chr04:29525261..29525285 (25 bp)
CAGAGCCACTATTGAGTCCATCTAC
LOC_Os04g49890
Target Sequence 
GTTTGTTGCCTGCTTAACTTAGCAAGTCATACTCTGAAGATAGTAGTTTTGTTGTTACAAGGAAGCATAAGTGACTGCAA
ATATCCAGCATTTGTTCTAGGTGAAAGTGTGCAGGTGCTATCCTGGATAATATTATCACTAGTAGTGTTCAGTTTTCAGA
AGACGAAATCCGCAAAGCTTCCGCTTAATTCGAGCATGGTGGATATTTAGCTTTCTGCAATCAATTACCAGTGTGGTATT
TGATCTCAGGTCTATTTTACTCGATCATGAATATTTAGGACCTGAAAAATGGATTAACCTGTTCATGCTTGNTATCTGCA
CTCTTCTATTTGTAATTTCCGCCAGGGGAAAAACAGGAATCACCCTTGTAGATAACAGCATAACAGAGCCACTATTGAGT
CCATCTAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.24644.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis