Browse Element(s) Details


Os.24676.1.A1_s_at

Description gb:CA763107
DB_XREF= gi:25807146
DB_XREF=BR060013A10H03.ab1
CLONE=BR060013A10H03.ab1
TID=Os.24676.1
CNT=2
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.24676 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_196900.1 (A.thaliana) putative protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3085011/11YDG/SRA domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g30810Os.9461.1.S1_at11/118+18888975..18898823Peptidase family M1 containing protein, expressed
LOC_Os08g30820Os.33747.1.S1_at11/118+18898491..18900444pre-mrna cleavage factor, putative, expressed
LOC_Os08g30830NANA8+18901116..18902314transposon protein, putative, unclassified, expressed
LOC_Os08g30840OsAffx.5994.1.S1_at10/118+18904105..18905604hypothetical protein
LOC_Os08g30850Os.24676.1.A1_s_at11/118+18910908..18914213YDG/SRA domain containing protein, expressed
LOC_Os08g30850OsAffx.17252.2.S1_x_at5/118+18910908..18914213YDG/SRA domain containing protein, expressed
LOC_Os08g30860OsAffx.17251.1.S1_at11/118+18916072..18916747hypothetical protein
LOC_Os08g30870OsAffx.17252.2.S1_x_at11/118+18918592..18921004YDG/SRA domain containing protein
LOC_Os08g30884Os.55348.1.S1_at11/118+18926844..18933060ethylene-responsive elongation factor EF-Ts precursor, putative, expressed
LOC_Os08g30884OsAffx.29442.1.S1_s_at11/118+18926844..18933060ethylene-responsive elongation factor EF-Ts precursor, putative, expressed
LOC_Os08g30884Os.50847.1.S1_at10/118+18926844..18933060ethylene-responsive elongation factor EF-Ts precursor, putative, expressed
LOC_Os08g30884OsAffx.29442.1.S1_at4/118+18926844..18933060ethylene-responsive elongation factor EF-Ts precursor, putative, expressed
LOC_Os08g30900Os.52835.1.S1_at10/118+18938187..18943536YDG/SRA domain containing protein, expressed
LOC_Os08g30900OsAffx.17252.2.S1_x_at1/118+18938187..18943536YDG/SRA domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0010216biological_processmaintenance of DNA methylation
GO:0016571biological_processhistone methylation
GO:0018022biological_processpeptidyl-lysine methylation
GO:0040029biological_processregulation of gene expression, epigenetic
GO:0008168molecular_functionmethyltransferase activity
GO:0042054molecular_functionhistone methyltransferase activity
GO:0046974molecular_functionhistone lysine N-methyltransferase activity (H3-K9 specific)
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.24676.1.A1_s_at--236--10831Chr08:18913792..18913816 (25 bp)
TTGTCCTGGGTGATATAATTAGCTT
LOC_Os08g30850
Os.24676.1.A1_s_at--938--7851Chr08:18913850..18913874 (25 bp)
GGTATGTTATAGTTGCAGGGTATCT
LOC_Os08g30850
Os.24676.1.A1_s_at--785--10331Chr08:18913886..18913910 (25 bp)
TTTACTGTACCCCTATTGGTTATGG
LOC_Os08g30850
Os.24676.1.A1_s_at--1068--5031Chr08:18913928..18913952 (25 bp)
GCAGATCATCTAAAGCTATGGCTAT
LOC_Os08g30850
Os.24676.1.A1_s_at--1044--8251Chr08:18913947..18913971 (25 bp)
GGCTATTTTAGTCATGTACTTCGTT
LOC_Os08g30850
Os.24676.1.A1_s_at--819--5192Chr08:18913983..18914007 (25 bp)
GCAATTTAGTCTTCCGATTATCCCA
LOC_Os08g30850
Os.24676.1.A1_s_at--987--5131Chr08:18914014..18914038 (25 bp)
GCAAAACAGGACTCGTTGGTTTGTT
LOC_Os08g30850
Os.24676.1.A1_s_at--794--8571Chr08:18914030..18914054 (25 bp)
TGGTTTGTTAGATCGGCCCAAGCCT
LOC_Os08g30850
Os.24676.1.A1_s_at--1121--2151Chr08:18914087..18914111 (25 bp)
ACAGCGCCGTCCATATTTGTATGCA
LOC_Os08g30850
Os.24676.1.A1_s_at--970--10251Chr08:18914102..18914126 (25 bp)
TTTGTATGCATTTTCCAGAGGTATC
LOC_Os08g30850
Os.24676.1.A1_s_at--1150--7851Chr08:18914121..18914145 (25 bp)
GGTATCTTTGCGATAACAACCATGC
LOC_Os08g30850
Target Sequence 
TTGTCCTGGGTGATATAATTAGCTTAGAAGGACAAGAAGTTACATGGGCCTGGTTGAAGGTATGTTATAGTTGCAGGGTA
TCTAAAGGGGATATTTTACTGTACCCCTATTGGTTATGGTAGTAGTGTAGTAGGAAGCAGATCATCTAAAGCTATGGCTA
TTTTAGTCATGTACTTCGTTAAGGTGAAGGGGCAATTTAGTCTTCCGATTATCCCAATCGAAGCAAAACAGGACTCGTTG
GTTTGTTAGATCGGCCCAAGCCTCATTTTGCATCTCGACGCACGACAGCCAAACCACAGCGCCGTCCATATTTGTATGCA
TTTTCCAGAGGTATCTTTGCGATAACAACCATGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.24676.1.A1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis