Browse Element(s) Details


Os.24799.1.S1_at

Description gb:AK063830.1
DB_XREF= gi:32973848
TID=Os.24799.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.24799 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023133O06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-122-B01, full insert sequence.
FL= gb:AK063830.1 gb:AK100922.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g6351011/11pentatricopeptide, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g63450Os.18419.1.S1_at11/113+35785019..35793232SnRK1-interacting protein 1, putative, expressed
LOC_Os03g63470Os.49864.2.S1_x_at11/113+35794524..35799482transducin family protein, putative, expressed
LOC_Os03g63470Os.49864.1.S1_s_at11/113+35794524..35799482transducin family protein, putative, expressed
LOC_Os03g63470Os.49864.2.S1_s_at11/113+35794524..35799482transducin family protein, putative, expressed
LOC_Os03g63470Os.11424.1.S1_x_at7/113+35794524..35799482transducin family protein, putative, expressed
LOC_Os03g63480Os.7979.1.S1_at10/113+35800460..35803069Ankyrin repeat domain protein 2, putative, expressed
LOC_Os03g63490Os.4531.1.S1_at11/113+35804135..35806721Pantoate-beta-alanine ligase, putative, expressed
LOC_Os03g63500Os.21096.1.S1_at10/113+35807631..35814424AFG1-like ATPase family protein, putative, expressed
LOC_Os03g63510Os.24799.1.S1_at11/113+35816478..35821838pentatricopeptide, putative, expressed
LOC_Os03g63520Os.35309.1.A1_at11/113+35822454..35827086Der1-like family protein, expressed
LOC_Os03g63530Os.19270.1.S1_at10/113+35829135..35833105Histone-like transcription factor and archaeal histone family protein, expressed
LOC_Os03g63540Os.5927.1.S1_at10/113+35834707..35835736expressed protein
LOC_Os03g63550Os.49114.1.S1_at11/113+35836236..35838324expressed protein
LOC_Os03g63560Os.24660.1.S1_at11/113+35839760..35841999pentatricopeptide, putative, expressed
LOC_Os03g63570OsAffx.3684.1.S1_at10/113+35843343..35844556hypothetical protein
LOC_Os03g63580OsAffx.25809.1.S1_x_at11/113+35845714..35847333phosphoesterase family protein, putative, expressed
LOC_Os03g63580OsAffx.25809.1.S1_at11/113+35845714..35847333phosphoesterase family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.24799.1.S1_at--779--9791Chr03:35817148..35817172 (25 bp)
TAAGCTTGGAGATCTGACGCCTGCT
LOC_Os03g63510
Os.24799.1.S1_at--266--9111Chr03:35817127..35817151 (25 bp)
TGCTCCATCCATGACGATTCCAATG
LOC_Os03g63510
Os.24799.1.S1_at--239--6591Chr03:35817112..35817136 (25 bp)
GATTCCAATGGCACATTCCTCAAGG
LOC_Os03g63510
Os.24799.1.S1_at--9--91Chr03:35817098..35817122 (25 bp)
ATTCCTCAAGGCCAACTCTGGGTTT
LOC_Os03g63510
Os.24799.1.S1_at--353--8851Chr03:35817053..35817077 (25 bp)
TGATCTTTGTTATCTTCTCCCTCAG
LOC_Os03g63510
Os.24799.1.S1_at--127--9531Chr03:35817020..35817044 (25 bp)
TCTCATGTTGCTACCACTGGGACAA
LOC_Os03g63510
Os.24799.1.S1_at--778--8271Chr03:35816972..35816996 (25 bp)
GGCATCCTGATGTGATACTCCAAGA
LOC_Os03g63510
Os.24799.1.S1_at--319--5571Chr03:35816760..35816784 (25 bp)
GAAAGAGTGTGGTTTGCCCGTTATT
LOC_Os03g63510
Os.24799.1.S1_at--1040--4491Chr03:35816700..35816724 (25 bp)
GCCGTGCCCGCATGAGAAGTGTTTG
LOC_Os03g63510
Os.24799.1.S1_at--650--7771Chr03:35816649..35816673 (25 bp)
GGTGCAAGTCAAATGTTCTGTTCCA
LOC_Os03g63510
Os.24799.1.S1_at--852--9231Chr03:35816547..35816571 (25 bp)
TCCATTTCCTCTTTGGTCCTATGAA
LOC_Os03g63510
Target Sequence 
TAAGCTTGGAGATCTGACGCCTGCTCCATCCATGACGATTCCAATGGCACATTCCTCAAGGCCAACTCTGGGTTTTCCCC
TAGGGACGGCGCTCCTGATCTTTGTTATCTTCTCCCTCAGTGGCATCTTCTCATGTTGCTACCACTGGGACAAGCTCCGT
GCCTTCCTCTGGTCTCGGCATCCTGATGTGATACTCCAAGAAGGCCAGCACACCGTCATCTCCATTGCGTCTCCGAGCAA
GACAACATCTGATCACAAGAACGAGAAAGCAGAGAAAGAGTGTGGTTTGCCCGTTATTATGCCTGGGGACAGGATCCCCA
AATTCTTCGCCAGGCCGTGCCCGCATGAGAAGTGTTTGCCTGCAGCAGAGGAGGAGGAAGCTGAGGTGCAAGTCAAATGT
TCTGTTCCACAATCTAGTTAGTAGCTGTAAATGAAGCCATACAGAGTGGGTGTATATAANCTTTTATTAGAACCTCTAAA
AAAAAATTCCATTTCCTCTTTGGTCCTATGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.24799.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis