Browse Element(s) Details


Os.24878.1.A1_at

Description gb:CA762933
DB_XREF= gi:25806972
DB_XREF=BR060003A20H07.ab1
CLONE=BR060003A20H07.ab1
TID=Os.24878.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.24878 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative Cf2Cf5 disease resistance protein (P0518F01.19), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4175011/11Leucine Rich Repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g41710Os.7941.2.S1_s_at11/111+23934211..23935404Chlorophyll a-b binding protein 2, chloroplast precursor, putative, expressed
LOC_Os01g41710Os.7941.2.S1_a_at11/111+23934211..23935404Chlorophyll a-b binding protein 2, chloroplast precursor, putative, expressed
LOC_Os01g41720OsAffx.9161.2.S1_at11/111+23937907..23942105expressed protein
LOC_Os01g41720OsAffx.9161.1.S1_x_at8/111+23937907..23942105expressed protein
LOC_Os01g41720Os.46481.2.S1_x_at1/111+23937907..23942105expressed protein
LOC_Os01g41720Os.26986.1.A1_at1/111+23937907..23942105expressed protein
LOC_Os01g41730Os.37007.1.S1_at11/111+23951137..23953867Protein kinase domain containing protein, expressed
LOC_Os01g41730Os.37007.2.S1_at11/111+23951137..23953867Protein kinase domain containing protein, expressed
LOC_Os01g41740OsAffx.23625.1.S1_at11/111+23957292..23958085hypothetical protein
LOC_Os01g41750Os.24878.1.A1_at11/111+23958615..23962223Leucine Rich Repeat family protein, expressed
LOC_Os01g41760NANA1+23964090..23964416hypothetical protein
LOC_Os01g41770OsAffx.21394.1.S1_at11/111+23966834..23969695Leucine Rich Repeat family protein, expressed
LOC_Os01g41780Os.40423.2.S1_x_at11/111+23975277..23978326Leucine Rich Repeat family protein, expressed
LOC_Os01g41780Os.40423.1.S1_at10/111+23975277..23978326Leucine Rich Repeat family protein, expressed
LOC_Os01g41790OsAffx.21393.1.S1_at11/111+23982858..23985164hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0007165biological_processsignal transduction
GO:0050832biological_processdefense response to fungi
GO:0005515molecular_functionprotein binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.24878.1.A1_at--564--2151Chr01:23959131..23959155 (25 bp)
ACAGCTACAAGCACTCGATGACCAG
LOC_Os01g41750
Os.24878.1.A1_at--88--10831Chr01:23959093..23959117 (25 bp)
TTGGAAATCCTGGTCTTTGTGGGCC
LOC_Os01g41750
Os.24878.1.A1_at--580--6411Chr01:23959000..23959024 (25 bp)
GATCTCTCTACCTCGGGATGAGCAT
LOC_Os01g41750
Os.24878.1.A1_at--962--7811Chr01:23958962..23958986 (25 bp)
GGTCTATGGACTGTGTTTTGCACCA
LOC_Os01g41750
Os.24878.1.A1_at--96--2631Chr01:23958924..23958948 (25 bp)
AACCTGGATGATGGCTTACTTTCGG
LOC_Os01g41750
Os.24878.1.A1_at--1159--8291Chr01:23958912..23958936 (25 bp)
GGCTTACTTTCGGATCATTGACAAT
LOC_Os01g41750
Os.24878.1.A1_at--1051--2911Chr01:23958878..23958902 (25 bp)
AAGGCCTATGTACAAGTGGCTATAA
LOC_Os01g41750
Os.24878.1.A1_at--136--1631Chr01:23958854..23958878 (25 bp)
AGCTGGAGTCGCTTGATGCGGAAAA
LOC_Os01g41750
Os.24878.1.A1_at--685--5871Chr01:23958811..23958835 (25 bp)
GAGCGTTGTTTCCACTGCAAATGAA
LOC_Os01g41750
Os.24878.1.A1_at--127--7951Chr01:23958714..23958738 (25 bp)
GGATATTTACTGTTCCTACTATAAT
LOC_Os01g41750
Os.24878.1.A1_at--1162--6831Chr01:23958684..23958708 (25 bp)
GTTTCCGATGAAACCTACTAGCATA
LOC_Os01g41750
Target Sequence 
ACAGCTACAAGCACTCGATGACCAGATTTATATATATGTTGGAAATCCTGGTCTTTGTGGGCCTCCTCTCTTGAAGAACT
GTTCAACTAATGGTACACAACAAAGTTTCTATGAAGATAGAAGCCATATGNGATCTCTCTACCTCGGGATGAGCATAGGA
TTTGTGATTGGTCTATGGACTGTGTTTTGCACCATGATGATGAAGAGAACCTGGATGATGGCTTACTTTCGGATCATTGA
CAATTTATATGATAAGGCCTATGTACAAGTGGCTATAAGCTGGAGTCGCTTGATGCGGAAAAACCAAGATGCAGCNTGAA
GAGCGTTGTTTCCACTGCAAATGAATTATTCAAGCTACTAGTATCTGAAAAACCTAGTAACTCAAAGAATAATTTTAGGT
GTTTTACTATTCCAAGTGGATATTTACTGTTCCTACTATAATATCTGGTTTCCGATGAAACCTACTAGCATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.24878.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis