Browse Element(s) Details


Os.24908.1.S1_at

Description gb:AK072472.1
DB_XREF= gi:32982495
TID=Os.24908.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.24908 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023119J10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023119J10, full insert sequence.
FL= gb:AK072472.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3995011/11potassium uptake protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g39910Os.27691.1.S1_x_at3/118+25157104..25160098retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g39920Os.27691.2.S1_x_at2/118+25160347..25161312retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g39920Os.27691.1.S1_x_at2/118+25160347..25161312retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g39930OsAffx.17425.1.S1_at11/118+25169117..25169446expressed protein
LOC_Os08g39940OsAffx.17426.1.S1_at11/118+25176585..25178901Leucine Rich Repeat family protein
LOC_Os08g39950Os.24908.1.S1_at11/118+25180701..25185727potassium uptake protein, expressed
LOC_Os08g39960Os.52809.1.S1_at11/118+25186185..25187874NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os08g39970Os.19508.1.S1_at11/118+25188689..25192696ENT domain containing protein, expressed
LOC_Os08g39980Os.57192.1.S1_x_at11/118+25193178..25196517Bromodomain containing protein, expressed
LOC_Os08g39980Os.57192.1.S1_at11/118+25193178..25196517Bromodomain containing protein, expressed
LOC_Os08g39980Os.54007.1.S1_s_at11/118+25193178..25196517Bromodomain containing protein, expressed
LOC_Os08g39990Os.49184.1.S1_at11/118+25200143..25201590expressed protein
LOC_Os08g40000OsAffx.29603.1.S1_at11/118+25204174..25204626hypothetical protein
LOC_Os08g40010Os.52786.1.S1_at10/118+25208257..25211106expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006813biological_processpotassium ion transport
GO:0009674molecular_functionpotassium:sodium symporter activity
GO:0015079molecular_functionpotassium ion transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.24908.1.S1_at--1083--8231Chr08:25185148..25185172 (25 bp)
GGCACAACTGTTTGAAGCGCTTTTT
LOC_Os08g39950
Os.24908.1.S1_at--554--2331Chr08:25185200..25185224 (25 bp)
AAAGAACTTCAGATCCAACATGTCC
LOC_Os08g39950
Os.24908.1.S1_at--55--6371Chr08:25185211..25185235 (25 bp)
GATCCAACATGTCCAGTCTAAAGAT
LOC_Os08g39950
Os.24908.1.S1_at--734--3411Chr08:25185383..25185407 (25 bp)
CAGAATTGTTTGGATGTGACCCATA
LOC_Os08g39950
Os.24908.1.S1_at--1042--7371Chr08:25185398..25185422 (25 bp)
GTGACCCATATTTTCTTAGCATGCA
LOC_Os08g39950
Os.24908.1.S1_at--1126--2631Chr08:25185423..25185447 (25 bp)
AACCATCTGCAATAATTGTCCTGTG
LOC_Os08g39950
Os.24908.1.S1_at--863--10351Chr08:25185509..25185533 (25 bp)
TTTTTCTCCCCTAATATTTCACACT
LOC_Os08g39950
Os.24908.1.S1_at--1155--171Chr08:25185524..25185548 (25 bp)
ATTTCACACTCTAAACTGCACCAAC
LOC_Os08g39950
Os.24908.1.S1_at--819--2551Chr08:25185537..25185561 (25 bp)
AACTGCACCAACTTGTAGGCTGGTT
LOC_Os08g39950
Os.24908.1.S1_at--647--7033Chr08:25185604..25185628 (25 bp)
GTACACATACCATTCTCATTTATTT
LOC_Os08g39950
Os.24908.1.S1_at--544--8611Chr08:25185672..25185696 (25 bp)
TGGTGAAAGTGTAAACCTCCTTGTA
LOC_Os08g39950
Target Sequence 
GGCACAACTGTTTGAAGCGCTTTTTTATTAATAACCTTTACAGGTTCTTGCAAAAGAACTTCAGATCCAACATGTCCAGT
CTAAAGATAAATCCTGGTAAAANCTTGCAAGTTGGAATGCTATATGAGATTTGAAGAAGGTGACCAATTGTGGATGCATA
AANGTGAAGTGTTAGCTAGAATGCTAGATTGCTGAAATTGGCAGACAGACAAGTTTTTCTTGATTATAAATGTCACAGAA
TTGTTTGGATGTGACCCATATTTTCTTAGCATGCAAACCATCTGCAATAATTGTCCTGTGAGTAGATGACCNAGTTATAT
ACACTTTTGGGATAATTTTATTAGTGGGATGCAATTCTCTTTTTTTCTCCCCTAATATTTCACACTCTAAACTGCACCAA
CTTGTAGGCTGGTTAGTGAATGGTAAAGAAAAAATGTTGCACAGTGTGCAATTTATGTACACATACCATTCTCATTTATT
TTCCAGTTGTATTTTGATAAGATGGTTATCTAAATCATATTCTTTGGTGAAAGTGTAAACCTCCTTGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.24908.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis