Browse Element(s) Details


Os.2493.2.S1_x_at

Description gb:AK062625.1
DB_XREF= gi:32972643
TID=Os.2493.2
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.2493 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative RNA-binding protein (OSJNBa0079L16.15), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-105-C02, full insert sequence.
FL= gb:AK062625.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3323011/11RNA recognition motif family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g33204NANA10+17082023..17082526hypothetical protein
LOC_Os10g33210Os.46447.1.S1_at11/1110+17086216..17091424POT family protein, expressed
LOC_Os10g33220OsAffx.22940.1.S1_s_at11/1110+17093442..17100793Transposable element protein, putative, MuDR
LOC_Os10g33220OsAffx.22940.5.S1_x_at10/1110+17093442..17100793Transposable element protein, putative, MuDR
LOC_Os10g33220Os.35344.3.S1_x_at9/1110+17093442..17100793Transposable element protein, putative, MuDR
LOC_Os10g33220OsAffx.22940.5.S1_at8/1110+17093442..17100793Transposable element protein, putative, MuDR
LOC_Os10g33220OsAffx.22940.2.S1_at8/1110+17093442..17100793Transposable element protein, putative, MuDR
LOC_Os10g33220Os.35344.18.S1_x_at7/1110+17093442..17100793Transposable element protein, putative, MuDR
LOC_Os10g33220OsAffx.22940.2.S1_s_at6/1110+17093442..17100793Transposable element protein, putative, MuDR
LOC_Os10g33220OsAffx.22940.3.S1_x_at6/1110+17093442..17100793Transposable element protein, putative, MuDR
LOC_Os10g33220OsAffx.31552.2.S1_at1/1110+17093442..17100793Transposable element protein, putative, MuDR
LOC_Os10g33230Os.2493.2.S1_x_at11/1110+17101875..17107207RNA recognition motif family protein, expressed
LOC_Os10g33230Os.2493.2.S1_s_at11/1110+17101875..17107207RNA recognition motif family protein, expressed
LOC_Os10g33230Os.2493.1.S1_s_at11/1110+17101875..17107207RNA recognition motif family protein, expressed
LOC_Os10g33230Os.2493.1.S2_at11/1110+17101875..17107207RNA recognition motif family protein, expressed
LOC_Os10g33230Os.2493.1.S1_at11/1110+17101875..17107207RNA recognition motif family protein, expressed
LOC_Os10g33240Os.4963.1.S1_at9/1110+17108084..17111500expressed protein
LOC_Os10g33250Os.2322.1.S1_at10/1110+17119605..17125465CER1 protein, putative, expressed
LOC_Os10g33250Os.2322.2.S1_at10/1110+17119605..17125465CER1 protein, putative, expressed
LOC_Os10g33260OsAffx.18500.1.S1_at11/1110+17127907..17128922hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0003723molecular_functionRNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.2493.2.S1_x_at--703--2951Chr10:17103595..17103617 (23 bp)
AATCAGTATTTCTCCGGGTTGGATG
LOC_Os10g33230
Os.2493.2.S1_x_at--497--611Chr10:17104394..17104418 (25 bp)
ATGCGATGCCATTTCCTTTTAGAGC
LOC_Os10g33230
Os.2493.2.S1_x_at--732--7551Chr10:17104430..17104454 (25 bp)
GGGCCTTTTGAATCAACTGCCTGGC
LOC_Os10g33230
Os.2493.2.S1_x_at--533--2551Chr10:17104444..17104468 (25 bp)
AACTGCCTGGCTGCCTGAGAAATGG
LOC_Os10g33230
Os.2493.2.S1_x_at--337--5991Chr10:17104471..17104495 (25 bp)
GAGACATCGACTGATTTTGCTTGAT
LOC_Os10g33230
Os.2493.2.S1_x_at--1074--6251Chr10:17104493..17104517 (25 bp)
GATGGGCTGACGATTTCCAATCTTG
LOC_Os10g33230
Os.2493.2.S1_x_at--313--3851Chr10:17104567..17104591 (25 bp)
CTGAAGGATCTTGTGCTGTGCAACA
LOC_Os10g33230
Os.2493.2.S1_x_at--15--6771Chr10:17104680..17104704 (25 bp)
GTTCAAGATGCTATCTGTCCTCATT
LOC_Os10g33230
Os.2493.2.S1_x_at--967--8671Chr10:17104695..17104719 (25 bp)
TGTCCTCATTTTCCGTTCAATTTAG
LOC_Os10g33230
Os.2493.2.S1_x_at--1137--9731Chr10:17104795..17104819 (25 bp)
TCAATTTTGGCCAGAGTTCCATCCC
LOC_Os10g33230
Os.2493.2.S1_x_at--895--6691Chr10:17104810..17104834 (25 bp)
GTTCCATCCCCAATGTACAGATCGA
LOC_Os10g33230
Target Sequence 
AATCAGTATTTCTCCGGGTTGGATGCGATGCCATTTCCTTTTAGAGCATGTCCAAGTGGGGCCTTTTGAATCAACTGCCT
GGCTGCCTGAGAAATGGCAGAGACATCGACTGATTTTGCTTGATGGGCTGACGATTTCCAATCTTGAAGCATTTGACACA
GAAAGCANGCATCTTGTNNTTAAGCGCTTCATTTTCTGAAGGATCTTGTGCTGTGCAACAAGATGGTGGTATGTGGAATC
ATGTTTCACTTTCAGTTTTATTTGGAAAAGAAAAGCATTTTCACCATGGTACTTGTACCAGGAAAGTTGTTCAAGATGCT
ATCTGTCCTCATTTTCCGTTCAATTTAGTAAATGGTATATTATAGTNGAAAGAAAGCATTACCAGCTACCATAGGAAGTA
TTATGTTTTCATTCAAAATCTTGTCAATTTTGGCCAGAGTTCCATCCCCAATGTACAGATCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.2493.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis