Browse Element(s) Details


Os.24942.3.S1_s_at

Description gb:NM_193923.1
DB_XREF= gi:34914929
GEN=B1096D03.32
TID=Os.24942.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.24942 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) B1096D03.32 (B1096D03.32), mRNA
DEF=Oryza sativa (japonica cultivar-group) B1096D03.32 (B1096D03.32), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g092604/11hypothetical protein
LOC_Os03g302102/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g09220NANA10+4745977..4752638retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g09229NANA10+4757686..4758017NA
LOC_Os10g09240Os.46791.1.S1_at11/1110+4760573..4761233expressed protein
LOC_Os10g09250NANA10+4765503..4767693retrotransposon, putative, centromere-specific
LOC_Os10g09260OsAffx.25377.1.S1_x_at9/1110+4771647..4772183hypothetical protein
LOC_Os10g09260OsAffx.25377.2.S1_x_at9/1110+4771647..4772183hypothetical protein
LOC_Os10g09260OsAffx.25377.1.S1_at8/1110+4771647..4772183hypothetical protein
LOC_Os10g09260Os.24942.3.S1_s_at4/1110+4771647..4772183hypothetical protein
LOC_Os10g09260Os.24942.4.S1_x_at2/1110+4771647..4772183hypothetical protein
LOC_Os10g09260OsAffx.25377.3.S1_x_at1/1110+4771647..4772183hypothetical protein
LOC_Os10g09270OsAffx.6613.1.S1_at8/1110+4776471..4779892hypothetical protein
LOC_Os10g09280Os.46314.3.S1_at11/1110+4782324..4788988transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g09280OsAffx.7362.1.S1_x_at2/1110+4782324..4788988transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g09280Os.54774.1.S1_at2/1110+4782324..4788988transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g09280Os.54774.1.S1_x_at2/1110+4782324..4788988transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g09280OsAffx.25367.1.S1_at1/1110+4782324..4788988transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g09290Os.40325.1.A1_at9/1110+4790787..4793391expressed protein
LOC_Os10g09290Os.49334.2.S1_at1/1110+4790787..4793391expressed protein
LOC_Os10g09300OsAffx.26189.1.A1_s_at2/1110+4794079..4795830retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g09300Os.29747.1.S1_at2/1110+4794079..4795830retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.24942.3.S1_s_at--786--65528Chr10:880003..880027 (25 bp)
GATTACCGCTGCCTCGGTGAGCCAT
NONE
Os.24942.3.S1_s_at--219--104729Chr10:880005..880029 (25 bp)
TTACCGCTGCCTCGGTGAGCCATTG
NONE
Os.24942.3.S1_s_at--29--47933Chr10:880010..880034 (25 bp)
GCTGCCTCGGTGAGCCATTGTTCGA
NONE
Os.24942.3.S1_s_at--369--44734Chr10:880013..880037 (25 bp)
GCCTCGGTGAGCCATTGTTCGATTC
NONE
Os.24942.3.S1_s_at--709--96921Chr08:10987892..10987916 (25 bp)
TCACAACCCTCGTGCATGCTTGCTT
NONE
Os.24942.3.S1_s_at--237--42920Chr08:10987899..10987923 (25 bp)
CCTCGTGCATGCTTGCTTGAAGCAG
NONE
Os.24942.3.S1_s_at--11--94320Chr08:10987901..10987925 (25 bp)
TCGTGCATGCTTGCTTGAAGCAGCT
NONE
Os.24942.3.S1_s_at--1134--90319Chr08:10987904..10987928 (25 bp)
TGCATGCTTGCTTGAAGCAGCTCAT
NONE
Os.24942.3.S1_s_at--955--95720Chr08:10987925..10987949 (25 bp)
TCATTGTCCCGTTCGAGCCGTCGTC
NONE
Os.24942.3.S1_s_at--927--106920Chr08:10987928..10987952 (25 bp)
TTGTCCCGTTCGAGCCGTCGTCGTT
NONE
Os.24942.3.S1_s_at--755--58727Chr10:880149..880173 (25 bp)
GAGCCGTTCCACAAGTCACCGCTGC
NONE
Target Sequence 
GATTACCGCTGCCTCGGTGAGCCATTGTTCGATTCCTTGCGCATATACCATCTCCTTGACCTCACAACCCTCGTGCATGC
TTGCTTGAAGCAGCTCATTGTCCCGTTCGAGCCGTCGTCGTTCACCCGAGGAGGAGCACCGTCGCCGAGCCGTTCCACAA
GTCACCGCTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.24942.3.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis