Browse Element(s) Details


Os.24972.1.S1_at

Description gb:AK102694.1
DB_XREF= gi:32987903
TID=Os.24972.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.24972 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033103E20, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033103E20, full insert sequence.
FL= gb:AK059580.1 gb:AK102694.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0993011/11glycosyltransferase 10, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g09910OsAffx.11965.1.S1_at11/112+5131555..5132334PHD-finger family protein
LOC_Os02g09920Os.47884.1.S1_at11/112+5145559..5151128PHD-finger family protein, expressed
LOC_Os02g09930Os.24972.1.S1_at11/112+5151783..5158882glycosyltransferase 10, putative, expressed
LOC_Os02g09940Os.4251.1.S1_at11/112+5166995..5167988AhpC/TSA family protein, expressed
LOC_Os02g09950Os.35344.18.S1_x_at9/112+5168444..5175359transposon protein, putative, Mutator sub-class
LOC_Os02g09950Os.35344.3.S1_x_at8/112+5168444..5175359transposon protein, putative, Mutator sub-class
LOC_Os02g09950OsAffx.22940.5.S1_at7/112+5168444..5175359transposon protein, putative, Mutator sub-class
LOC_Os02g09950OsAffx.22940.5.S1_x_at4/112+5168444..5175359transposon protein, putative, Mutator sub-class
LOC_Os02g09960OsAffx.24179.1.S1_x_at11/112+5179778..5182007Protein kinase domain containing protein, expressed
LOC_Os02g09960Os.4253.1.S1_s_at11/112+5179778..5182007Protein kinase domain containing protein, expressed
LOC_Os02g09970Os.55985.1.S1_at9/112+5183577..5184377expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0009294biological_processDNA mediated transformation
GO:0009618biological_processresponse to pathogenic bacteria
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
GO:0016759molecular_functioncellulose synthase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.24972.1.S1_at--850--9251Chr02:5152330..5152354 (25 bp)
TCCTCTTCTCCTGTGGATGGTATGA
LOC_Os02g09930
Os.24972.1.S1_at--836--711Chr02:5152309..5152333 (25 bp)
ATGATCTTGCATTCGGGAAGGACCA
LOC_Os02g09930
Os.24972.1.S1_at--1102--5291Chr02:5152293..5152317 (25 bp)
GAAGGACCATTTCTTCATCTACCTC
LOC_Os02g09930
Os.24972.1.S1_at--318--6731Chr02:5152251..5152275 (25 bp)
GTTCTTCATCGTCGGTATCGGATAC
LOC_Os02g09930
Os.24972.1.S1_at--174--6471Chr02:5152231..5152255 (25 bp)
GATACGTTGGCACAATTGTTCCTCA
LOC_Os02g09930
Os.24972.1.S1_at--931--211Chr02:5152181..5152205 (25 bp)
ATATATTTTCGAGATCGGCCGCCTT
LOC_Os02g09930
Os.24972.1.S1_at--510--4171Chr02:5152162..5152186 (25 bp)
CGCCTTCAAATTCACCATGTCTTCA
LOC_Os02g09930
Os.24972.1.S1_at--92--3771Chr02:5152078..5152102 (25 bp)
CTCTCATTTTTCTCTGTTTCTTTTC
LOC_Os02g09930
Os.24972.1.S1_at--848--2391Chr02:5151967..5151991 (25 bp)
AAACTAGGGCAATTGGTGTGATCTG
LOC_Os02g09930
Os.24972.1.S1_at--226--511Chr02:5151919..5151943 (25 bp)
ATCGTGATGTGTTTTTGCTTGTAGC
LOC_Os02g09930
Os.24972.1.S1_at--162--2011Chr02:5151856..5151880 (25 bp)
ACTCTGCTTCCGTTGTACTGTAATA
LOC_Os02g09930
Target Sequence 
TCCTCTTCTCCTGTGGATGGTATGATCTTGCATTCGGGAAGGACCATTTCTTCATCTACCTCTTCTTCCAAGGCGCGGCG
TTCTTCATCGTCGGTATCGGATACGTTGGCACAATTGTTCCTCAATCATAACAGAAGAGAAGCAAATATATATATTTTCG
AGATCGGCCGCCTTCAAATTCACCATGTCTTCAGCAAGAGTCTAGTAGTTATATAAATCAGTTTGAAGTAAAGATCATGC
AGCATTTTTTTACTCTCATTTTTCTCTGTTTCTTTTCTTTTCTTTTTCTTTTCTTCTTTGCCTTTTTCTCTGTTATGTGC
TATTGTAAAAAATAGTGCAGTGTAAGGTCACTGCAGGAAGAAAAAAACTAGGGCAATTGGTGTGATCTGGGCAAGGAGGA
GGTGAGGAGGATATCGTGATGTGTTTTTGCTTGTAGCAAAGTACGTGAGTGGTATGCTTAAAGAGGAGCAGGATGACTCT
GCTTCCGTTGTACTGTAATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.24972.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis