Browse Element(s) Details


Os.24980.1.S1_at

Description gb:AK061002.1
DB_XREF= gi:32971020
TID=Os.24980.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.24980 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unnamed protein product (Gene), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-203-G09, full insert sequence.
FL= gb:AK061002.1 gb:AK099335.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1694011/11Histidine biosynthesis bifunctional protein hisIE, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g16890Os.206.1.S1_at11/111+9654761..965805760S ribosomal protein L30, putative, expressed
LOC_Os01g16900Os.207.1.S1_at10/111+9662198..96669783-isopropylmalate dehydrogenase, chloroplast precursor, putative, expressed
LOC_Os01g16910Os.43682.1.S1_at11/111+9667878..9672525mitochondrial import receptor subunit TOM40 homolog, putative, expressed
LOC_Os01g16920Os.209.1.S1_at11/111+9676606..9677661expressed protein
LOC_Os01g16930Os.11448.2.S1_x_at11/111+9679404..9680948Presenilin family protein, expressed
LOC_Os01g16940Os.24980.1.S1_at11/111+9681609..9686284Histidine biosynthesis bifunctional protein hisIE, chloroplast precursor, putative, expressed
LOC_Os01g16950Os.212.1.S1_at11/111+9687092..9688882Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g16960Os.213.1.S1_at11/111+9690805..9696595Pyruvate kinase, cytosolic isozyme, putative, expressed
LOC_Os01g16970Os.6899.1.S2_at11/111+9699515..9706464calmodulin-binding protein, putative, expressed
LOC_Os01g16970Os.6899.1.S1_at11/111+9699515..9706464calmodulin-binding protein, putative, expressed
LOC_Os01g16970Os.6899.1.S1_a_at11/111+9699515..9706464calmodulin-binding protein, putative, expressed
LOC_Os01g16970Os.6899.2.S1_x_at10/111+9699515..9706464calmodulin-binding protein, putative, expressed
LOC_Os01g16970OsAffx.29480.1.S1_s_at3/111+9699515..9706464calmodulin-binding protein, putative, expressed
LOC_Os01g16970OsAffx.5663.1.S1_at1/111+9699515..9706464calmodulin-binding protein, putative, expressed
LOC_Os01g16980Os.54420.1.S1_x_at10/111+9708409..9709197expressed protein
LOC_Os01g16980Os.54420.1.S1_at10/111+9708409..9709197expressed protein
LOC_Os01g16980OsAffx.9986.1.S1_at4/111+9708409..9709197expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0000105biological_processhistidine biosynthesis
GO:0004635molecular_functionphosphoribosyl-AMP cyclohydrolase activity
GO:0004636molecular_functionphosphoribosyl-ATP diphosphatase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.24980.1.S1_at--1159--3211Chr01:9684344..9684368 (25 bp)
CAAGATAGGCAGGTTGTCTCAACTC
LOC_Os01g16940
Os.24980.1.S1_at--973--7151Chr01:9684329..9684353 (25 bp)
GTCTCAACTCTGTACTCACTTGAAG
LOC_Os01g16940
Os.24980.1.S1_at--703--3091Chr01:9684234..9684258 (25 bp)
AATACTTGATAACCGGCTGCTTTGC
LOC_Os01g16940
Os.24980.1.S1_at--674--5451Chr01:9681997..9682021 (25 bp)
GAACGAGGACGAGAGCCGCACAATC
LOC_Os01g16940
Os.24980.1.S1_at--692--7711Chr01:9681964..9681988 (25 bp)
GGGTGATTTGCTATACCACGCGATG
LOC_Os01g16940
Os.24980.1.S1_at--158--5491Chr01:9681909..9681933 (25 bp)
GAACAGGTCTTGGAGGTCCTCAGGA
LOC_Os01g16940
Os.24980.1.S1_at--997--1031Chr01:9681896..9681920 (25 bp)
AGGTCCTCAGGAAGCGATTCTCGCA
LOC_Os01g16940
Os.24980.1.S1_at--1151--1631Chr01:9681884..9681908 (25 bp)
AGCGATTCTCGCAGTCTGGTATTGA
LOC_Os01g16940
Os.24980.1.S1_at--138--891Chr01:9681854..9681878 (25 bp)
AGGCCAGTCGCAACAAATCTTAGGA
LOC_Os01g16940
Os.24980.1.S1_at--493--3671Chr01:9681795..9681819 (25 bp)
CTTATGTCGTATCGGCATTGGTGCC
LOC_Os01g16940
Os.24980.1.S1_at--634--8211Chr01:9681664..9681688 (25 bp)
GGAATTTGCAGTGCTGTTCTTGCTG
LOC_Os01g16940
Target Sequence 
CAAGATAGGCAGGTTGTCTCAACTCTGTACTCACTTGAAGATACAATTAGTAGACGGAAGGAAGAGATAGTTACTGAAGG
AAGTGGCAAGCCATCATGGACAAAAAAACTAATACTTGATAACCGGCTGCTTTGCTCAAAAATAAGCGAAGAAGCTGGAG
AGCTAAACCAAACACTGCTTGAGAACGAGGACGAGAGCCGCACAATCAGTGAGATGGGTGATTTGCTATACCACGCGATG
GTGCTGCTTAGGGTCAAGGGCGTGAGGATGGAACAGGTCTTGGAGGTCCTCAGGAAGCGATTCTCGCAGTCTGGTATTGA
GGAGAAGGCCAGTCGCAACAAATCTTAGGATATTACTCACAGAGTGGATGGGTTTACCAGTTTGCTTATGTCGTATCGGC
ATTGGTGCCAAGTGTGTACCATTGAGTAGTTTGGTCTTCTTAATTAGACCGAAGGTTGTGAATTGTGATTATGCTTTAAT
TGTTCTCCAATAAGACACTGAGCAAATACATGTCTGGAATTTGCAGTGCTGTTCTTGCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.24980.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis