Browse Element(s) Details


Os.25022.1.A1_at

Description gb:AK063392.1
DB_XREF= gi:32973410
TID=Os.25022.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.25022 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-114-H04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-114-H04, full insert sequence.
FL= gb:AK063392.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4161011/11Ubiquitin carboxyl-terminal hydrolase family protein, expressed
LOC_Os08g416201/11Ubiquitin carboxyl-terminal hydrolase family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g41550Os.50537.1.S1_at11/118+26112535..26118103expressed protein
LOC_Os08g41560Os.49929.1.S1_at11/118+26120644..26123971expressed protein
LOC_Os08g41570OsAffx.29622.1.S1_at11/118+26127008..26130062hypothetical protein
LOC_Os08g41580Os.54140.1.S1_at11/118+26130550..26135298Ubiquitin carboxyl-terminal hydrolase 1, putative, expressed
LOC_Os08g41580OsAffx.29623.2.S1_s_at1/118+26130550..26135298Ubiquitin carboxyl-terminal hydrolase 1, putative, expressed
LOC_Os08g41590OsAffx.17460.1.S1_at11/118+26136620..26137898POT family protein, expressed
LOC_Os08g41600OsAffx.6106.1.S1_x_at11/118+26139834..26140312proton-dependent oligopeptide transport, putative
LOC_Os08g41610Os.25022.1.A1_at11/118+26142472..26146492Ubiquitin carboxyl-terminal hydrolase family protein, expressed
LOC_Os08g41620OsAffx.29623.2.S1_s_at11/118+26149187..26153100Ubiquitin carboxyl-terminal hydrolase family protein
LOC_Os08g41620Os.25022.1.A1_at1/118+26149187..26153100Ubiquitin carboxyl-terminal hydrolase family protein
LOC_Os08g41630OsAffx.29624.1.S1_s_at11/118+26154545..26158623Ubiquitin carboxyl-terminal hydrolase family protein, expressed
LOC_Os08g41630OsAffx.29623.2.S1_s_at1/118+26154545..26158623Ubiquitin carboxyl-terminal hydrolase family protein, expressed
LOC_Os08g41640OsAffx.29625.1.S1_at11/118+26160847..26166554Ubiquitin carboxyl-terminal hydrolase family protein
LOC_Os08g41640OsAffx.29623.2.S1_s_at1/118+26160847..26166554Ubiquitin carboxyl-terminal hydrolase family protein
LOC_Os08g41650Os.53468.1.S1_at11/118+26168245..26169036expressed protein
LOC_Os08g41660OsAffx.29626.1.S1_at11/118+26171295..26171876hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0000502cellular_componentproteasome complex (sensu Eukaryota)
GO:0004843molecular_functionubiquitin-specific protease activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.25022.1.A1_at--1031--4292Chr08:26143030..26143054 (25 bp)
CCTCATGGTTTCGTGCAAGTGATGA
LOC_Os08g41610
Os.25022.1.A1_at--1000--2551Chr08:26142932..26142956 (25 bp)
AACTGAGATGTCCAGAATTCAACTA
LOC_Os08g41610
Os.25022.1.A1_at--1047--1031Chr08:26142881..26142905 (25 bp)
AGGTGTGCCAGATTGTCAAGCGTTC
LOC_Os08g41610
Os.25022.1.A1_at--317--10631Chr08:26142869..26142893 (25 bp)
TTGTCAAGCGTTCTTTGGACGACCA
LOC_Os08g41610
Os.25022.1.A1_at--231--3471Chr08:26142804..26142828 (25 bp)
CAGGGCTTCAATTTGATCGCGACAT
LOC_Os08g41610
Os.25022.1.A1_at--223--3191Chr08:26142796..26142820 (25 bp)
CAATTTGATCGCGACATGGGCATGC
LOC_Os08g41610
Os.25022.1.A1_at--407--3532Chr08:26142732..26142756 (25 bp)
CATGCATGCATATCCATCCTTTTTA
LOC_Os08g41610
Os.25022.1.A1_at--929--6611Chr08:26142661..26142685 (25 bp)
GTTGGACATATAGCGTTAGAGAATT
LOC_Os08g41610
Os.25022.1.A1_at--272--3211Chr08:26142633..26142657 (25 bp)
CAAGGTTACTATATAGGCACAGGTA
LOC_Os08g41610
Os.25022.1.A1_at--433--7011Chr08:26142611..26142635 (25 bp)
GTAACAGTTACACCCCTGGTACAGT
LOC_Os08g41610
Os.25022.1.A1_at--976--5473Chr10:13419239..13419268 (23 bp)
GAACATTTACTTTGAAATTTGCCTC
NONE
Target Sequence 
CCTCATGGTTTCGTGCAAGTGATGACAGCATCNGNGAAGTCTCTTTAGAAGAAGTTCTCAAGTGCGAGGCTTATCTTCTT
TTCTATGAGAGGATGGAAAACTGAGATGTCCAGAATTCAACTAATNAGAATAGCAATCACAAAGGAAGCAGGTGTGCCAG
ATTGTCAAGCGTTCTTTGGACGACCAAGAATCCAATTCTAATCAGGTTAATTTGGNTGAGTCATTTCAGGGCTTCAATTT
GATCGCGACATGGGCATGCTAAGGNATTTCAGTTGTTCTTGACCATNTGATCTGCTTACATGCATGCATATCCATCCTTT
TTATGTTATGAANGCGTTAGGATTCCATTTGAAAACAGAAATTAGTATAGTTGGACATATAGCGTTAGAGAATTGAACAA
GGTTACTATATAGGCACAGGTAACAGTTACACCCCTGGTACAGTTTTTGTGGATGTTGCTGTTATTTGCAATTACTTTAC
AGTACTATAGAGAAATGGAACATTTACTTTGAAATTTGCCTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.25022.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis