Browse Element(s) Details


Os.25120.1.S1_at

Description gb:NM_192269.1
DB_XREF= gi:34911621
GEN=P0039G05.13
TID=Os.25120.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.25120 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0039G05.13 (P0039G05.13), mRNA
DEF=Oryza sativa (japonica cultivar-group) P0039G05.13 (P0039G05.13), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4539011/11HD domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g45340NANA1+26068882..26069310hypothetical protein
LOC_Os01g45350Os.34863.1.S1_at7/111+26072100..26074651limonene cyclase like protein, putative, expressed
LOC_Os01g45350OsAffx.27499.3.S1_x_at1/111+26072100..26074651limonene cyclase like protein, putative, expressed
LOC_Os01g45360Os.45985.1.S1_at10/111+26075057..26077312expressed protein
LOC_Os01g45370Os.35811.1.S1_at11/111+26079146..26082617radical SAM enzyme, Cfr family protein, expressed
LOC_Os01g45380Os.30916.1.S1_at11/111+26084643..26089035protein kinase, putative, expressed
LOC_Os01g45390OsAffx.2237.1.S1_at11/111+26089384..26093287HD domain containing protein, expressed
LOC_Os01g45390Os.25120.1.S1_s_at11/111+26089384..26093287HD domain containing protein, expressed
LOC_Os01g45390Os.25120.1.S1_at11/111+26089384..26093287HD domain containing protein, expressed
LOC_Os01g45400OsAffx.11477.1.S1_x_at11/111+26094018..26094482ubiquitin family protein, putative
LOC_Os01g45400OsAffx.11477.1.S1_at11/111+26094018..26094482ubiquitin family protein, putative
LOC_Os01g45410OsAffx.11478.1.S1_at9/111+26095471..26095944hypothetical protein
LOC_Os01g45420OsAffx.11479.1.S1_at11/111+26098440..26098898ubiquitin family protein, putative, expressed
LOC_Os01g45430OsAffx.2238.1.S1_at11/111+26100801..26103027hypothetical protein
LOC_Os01g45430Os.17986.1.S1_s_at11/111+26100801..26103027hypothetical protein
LOC_Os01g45439Os.5202.1.S1_at11/111+26104446..26109149expressed protein
LOC_Os01g45439OsAffx.9248.1.S1_at4/111+26104446..26109149expressed protein
LOC_Os01g45450OsAffx.9247.1.S1_at11/111+26115550..26117836ATPase, AAA family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003824molecular_functioncatalytic activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.25120.1.S1_at--1010--7511Chr01:26090737..26090852 (25 bp)
GTGGAGGACCAATAGCTGATGAGAT
LOC_Os01g45390
Os.25120.1.S1_at--186--6191Chr01:26090740..26090855 (25 bp)
GAGGACCAATAGCTGATGAGATCAA
LOC_Os01g45390
Os.25120.1.S1_at--1162--691Chr01:26090846..26090870 (25 bp)
ATGAGATCAAGGAGCTCTGGGAAGA
LOC_Os01g45390
Os.25120.1.S1_at--590--6451Chr01:26090850..26090874 (25 bp)
GATCAAGGAGCTCTGGGAAGAATAT
LOC_Os01g45390
Os.25120.1.S1_at--604--5511Chr01:26090875..26090899 (25 bp)
GAAAATAATTCATCCATTGAAGCCA
LOC_Os01g45390
Os.25120.1.S1_at--765--9571Chr01:26090884..26090908 (25 bp)
TCATCCATTGAAGCCAACCTTGTAA
LOC_Os01g45390
Os.25120.1.S1_at--824--9231Chr01:26090887..26090911 (25 bp)
TCCATTGAAGCCAACCTTGTAAAGG
LOC_Os01g45390
Os.25120.1.S1_at--87--5271Chr01:26090893..26090917 (25 bp)
GAAGCCAACCTTGTAAAGGATTTTG
LOC_Os01g45390
Os.25120.1.S1_at--1133--4371Chr01:26090896..26090920 (25 bp)
GCCAACCTTGTAAAGGATTTTGATA
LOC_Os01g45390
Os.25120.1.S1_at--108--2891Chr01:26091404..26091427 (24 bp)
AAGGGGTGTCATGCAAACCAGGGTT
LOC_Os01g45390
Os.25120.1.S1_at--928--5491Chr01:26091445..26091715 (25 bp)
GAAAATTTTCGGAGCCGTGGAGCCG
LOC_Os01g45390
Target Sequence 
GTGGAGGACCAATAGCTGATGAGATCAAGGAGCTCTGGGAAGAATATGAAAATAATTCATCCATTGAAGCCAACCTTGTA
AAGGATTTTGATAAAAGGGGTGTCATGCAAACCAGGGTTCAATCTATCGGGAAAGGGAAAATTTTCGGAGCCGTGGAGCC
G

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.25120.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis