Browse Element(s) Details


Os.25221.1.S1_at

Description gb:AK072210.1
DB_XREF= gi:32982233
TID=Os.25221.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.25221 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013165J23, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013165J23, full insert sequence.
FL= gb:AK072210.1 gb:AK065643.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2934011/11HSF-type DNA-binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g29290NANA2+17397604..17398845hypothetical protein
LOC_Os02g29300Os.27557.1.S1_at10/112+17400342..17405250expressed protein
LOC_Os02g29310OsAffx.2791.1.S1_at11/112+17409434..17409856hypothetical protein
LOC_Os02g29320OsAffx.2792.1.S1_s_at11/112+17410542..17413326expressed protein
LOC_Os02g29330OsAffx.22940.2.S1_s_at11/112+17414731..17419698transposon protein, putative, Mutator sub-class
LOC_Os02g29330OsAffx.22940.1.S1_s_at11/112+17414731..17419698transposon protein, putative, Mutator sub-class
LOC_Os02g29330OsAffx.22940.5.S1_x_at10/112+17414731..17419698transposon protein, putative, Mutator sub-class
LOC_Os02g29330OsAffx.22940.5.S1_at10/112+17414731..17419698transposon protein, putative, Mutator sub-class
LOC_Os02g29330OsAffx.22940.3.S1_x_at9/112+17414731..17419698transposon protein, putative, Mutator sub-class
LOC_Os02g29330OsAffx.22940.2.S1_at8/112+17414731..17419698transposon protein, putative, Mutator sub-class
LOC_Os02g29330Os.35344.3.S1_x_at8/112+17414731..17419698transposon protein, putative, Mutator sub-class
LOC_Os02g29330Os.35344.18.S1_x_at6/112+17414731..17419698transposon protein, putative, Mutator sub-class
LOC_Os02g29330OsAffx.31552.2.S1_at1/112+17414731..17419698transposon protein, putative, Mutator sub-class
LOC_Os02g29340Os.25221.1.S1_at11/112+17422161..17425495HSF-type DNA-binding domain containing protein, expressed
LOC_Os02g29350OsAffx.12270.1.S1_at9/112+17429981..17431271hypothetical protein
LOC_Os02g29360Os.8066.1.S1_at2/112+17433950..17435646expressed protein
LOC_Os02g29370NANA2+17437564..17439723transposon protein, putative, Mariner sub-class, expressed
LOC_Os02g29380Os.11879.1.S1_at11/112+17440484..17449287expressed protein
LOC_Os02g29390OsAffx.12271.1.S1_at11/112+17450426..17451311hypothetical protein
LOC_Os02g29390OsAffx.2664.1.S1_at1/112+17450426..17451311hypothetical protein
LOC_Os02g29390Os.52777.1.S1_s_at1/112+17450426..17451311hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009408biological_processresponse to heat
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.25221.1.S1_at--397--8831Chr02:17424904..17424928 (25 bp)
TGATTCTCGTACAGCAGATGCCACA
LOC_Os02g29340
Os.25221.1.S1_at--804--1291Chr02:17424919..17424943 (25 bp)
AGATGCCACAACACCACGAGCGGAT
LOC_Os02g29340
Os.25221.1.S1_at--747--1851Chr02:17424934..17424958 (25 bp)
ACGAGCGGATGCACGAGTAGCCAGT
LOC_Os02g29340
Os.25221.1.S1_at--515--4611Chr02:17425021..17425045 (25 bp)
GCGACCTGGCTGCTCTGAAACTGAA
LOC_Os02g29340
Os.25221.1.S1_at--420--2751Chr02:17425063..17425087 (25 bp)
AAGAACAGATACTTCCAGGGAGCAA
LOC_Os02g29340
Os.25221.1.S1_at--238--8271Chr02:17425098..17425122 (25 bp)
GGCAGGCATATGATCACTCACGGAA
LOC_Os02g29340
Os.25221.1.S1_at--932--5751Chr02:17425133..17425157 (25 bp)
GACGTGGAACAACTGAAACTCTGAA
LOC_Os02g29340
Os.25221.1.S1_at--773--7711Chr02:17425254..17425278 (25 bp)
GGGTGTACAACATCACACAGGTGTA
LOC_Os02g29340
Os.25221.1.S1_at--975--2271Chr02:17425349..17425373 (25 bp)
AAATCGATGTGTCTGTCTGTCTGGC
LOC_Os02g29340
Os.25221.1.S1_at--179--5011Chr02:17425372..17425396 (25 bp)
GCATGGTTTCTCATCTTGTTGGTAG
LOC_Os02g29340
Os.25221.1.S1_at--533--9051Chr02:17425409..17425433 (25 bp)
TGCAGTGTCAAGCTGCCACAGCGGA
LOC_Os02g29340
Target Sequence 
TGATTCTCGTACAGCAGATGCCACAACACCACGAGCGGATGCACGAGTAGCCAGTGAGGCTCCTGCAGCCCCGGCTGCAG
TGGTGAATGACAAGTTCTGGGAGCAGTTCNTAACAGAGCGACCTGGCTGCTCTGAAACTGAAGANGCAAGCTCTGGCCTA
AGAACAGATACTTCCAGGGAGCAAATGGAGAACAGGCAGGCATATGATCACTCACGGAATGACAGAGAAGACGTGGAACA
ACTGAAACTCTGAATTTACTATAGAATTATACAATTTACAAGAAGGGATACAGGCGTACAGTGNAAGATGTTTAGAATCA
GGAACCTGCTGTTAAACATGACAGATCAATGGGTGTACAACATCACACAGGTGTACATATTTTTTTTCCCTGAATGTTTC
GGAGGGTTAAGATTAATAGTTCGATTAACCACACCNAGTTGTTGNAAAATCGATGTGTCTGTCTGTCTGGCATGGTTTCT
CATCTTGTTGGTAGTGATTTATGTTATGCAGTGTCAAGCTGCCACAGCGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.25221.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis