Browse Element(s) Details


Os.25231.1.S1_x_at

Description gb:CA762992
DB_XREF= gi:25807031
DB_XREF=BR060001000C02.ab1
CLONE=BR060001000C02.ab1
TID=Os.25231.1
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.25231 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative leaf protein (OSJNBa0078O01.25), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3575011/11pentatricopeptide, putative, expressed
LOC_Os10g357304/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g35690Os.5981.1.S1_at11/1110+18754688..18758049ribosomal protein S18 containing protein, expressed
LOC_Os10g35710Os.10526.1.S1_a_at11/1110+18763069..18766056expressed protein
LOC_Os10g35720Os.11576.1.S1_a_at11/1110+18767214..18770999glutaredoxin-related protein, expressed
LOC_Os10g35730Os.15944.1.S1_a_at11/1110+18774478..18776095expressed protein
LOC_Os10g35730Os.15944.2.S1_x_at11/1110+18774478..18776095expressed protein
LOC_Os10g35730Os.25231.1.S1_x_at4/1110+18774478..18776095expressed protein
LOC_Os10g35740OsAffx.6879.1.S1_at11/1110+18778654..18778955hypothetical protein
LOC_Os10g35750Os.25231.1.S1_x_at11/1110+18779352..18781429pentatricopeptide, putative, expressed
LOC_Os10g35750Os.25231.1.S1_at11/1110+18779352..18781429pentatricopeptide, putative, expressed
LOC_Os10g35750Os.15944.2.S1_x_at2/1110+18779352..18781429pentatricopeptide, putative, expressed
LOC_Os10g35760Os.46648.1.S1_at11/1110+18782630..18784562pentatricopeptide, putative, expressed
LOC_Os10g35760Os.15944.2.S1_x_at1/1110+18782630..18784562pentatricopeptide, putative, expressed
LOC_Os10g35770Os.7675.1.S1_at11/1110+18800270..18803895expressed protein
LOC_Os10g35770Os.21300.2.S1_x_at1/1110+18800270..18803895expressed protein
LOC_Os10g35780OsAffx.18527.1.S1_at10/1110+18805819..18806873hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.25231.1.S1_x_at--1100--3352Chr10:18780834..18780858 (25 bp)
CACCTGACCTGACGAATGTGCTGAT
LOC_Os10g35750
Os.25231.1.S1_x_at--1138--5272Chr10:18780847..18780871 (25 bp)
GAATGTGCTGATGAGCCTGAACTAT
LOC_Os10g35750
Os.25231.1.S1_x_at--596--5872Chr10:18780859..18780883 (25 bp)
GAGCCTGAACTATTTCGCGGAGCAA
LOC_Os10g35750
Os.25231.1.S1_x_at--363--1351Chr10:18780924..18780948 (25 bp)
AGAGATTGATTACTCCAACAAGGGA
LOC_Os10g35750
Os.25231.1.S1_x_at--1126--3252Chr10:18780939..18780963 (25 bp)
CAACAAGGGACATTTACCATGGGTT
LOC_Os10g35750
Os.25231.1.S1_x_at--159--4351Chr10:18780992..18781016 (25 bp)
CCAGTGTCAGACTTGCTTGATCGTA
LOC_Os10g35750
Os.25231.1.S1_x_at--783--551Chr10:18781058..18781082 (25 bp)
ATCCTTGCCGGAGAAGTCCACTAGG
LOC_Os10g35750
Os.25231.1.S1_x_at--431--5331Chr10:18781070..18781094 (25 bp)
GAAGTCCACTAGGTACGCAGGATTG
LOC_Os10g35750
Os.25231.1.S1_x_at--888--8891Chr10:18781110..18781134 (25 bp)
TGACCAATTATTCCTTTTAGTTACT
LOC_Os10g35750
Os.25231.1.S1_x_at--766--2731Chr10:18781166..18781190 (25 bp)
AAGCAAGTGCAAACCCACTGGCCCG
LOC_Os10g35750
Os.25231.1.S1_x_at--459--6551Chr10:18781206..18781230 (25 bp)
GATTATAAACCTCTGTACAACTGCT
LOC_Os10g35750
Target Sequence 
CACCTGACCTGACGAATGTGCTGATGAGCCTGAACTATTTCGCGGAGCAAAAGAATGTCGAAGCAGCTGAGGAGATGGCA
AGCTTATTACAGAGATTGATTACTCCAACAAGGGACATTTACCATGGGTTACTGAAGACATATGTCAATGCAGGAAAACC
AGTGTCAGACTTGCTTGATCGTATGAAAAAAGATGGCATGGAGGCTGATGAGGAAACAGAGAAAATCCTTGCCGGAGAAG
TCCACTAGGTACGCAGGATTGGATAAAACATATCACTGACCAATTATTCCTTTTAGTTACTTATTTTGNGTCTTTTTTCT
TGNTTCTGGGGCAAGCAAGTGCAAACCCACTGGCCCGTGGATTTGAGTATTTGATTATAAACCTCTGTACAACTGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.25231.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis