Browse Element(s) Details


Os.25317.1.S1_at

Description gb:AK064260.1
DB_XREF= gi:32974278
TID=Os.25317.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.25317 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-105-D04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-105-D04, full insert sequence.
FL= gb:AK119472.1 gb:AK064260.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5152011/11Fip1 motif family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g51470Os.10468.1.S1_at11/113+29401687..29404169expressed protein
LOC_Os03g51479Os.55664.1.S1_at11/113+29405538..29411288Maf-like protein, expressed
LOC_Os03g51479Os.31771.2.S1_at11/113+29405538..29411288Maf-like protein, expressed
LOC_Os03g51479Os.31771.2.S1_x_at11/113+29405538..29411288Maf-like protein, expressed
LOC_Os03g51479Os.31771.1.S1_at11/113+29405538..29411288Maf-like protein, expressed
LOC_Os03g51479OsAffx.5618.1.S1_at1/113+29405538..29411288Maf-like protein, expressed
LOC_Os03g51479OsAffx.5618.1.S1_x_at1/113+29405538..29411288Maf-like protein, expressed
LOC_Os03g51490Os.31771.3.S1_at10/113+29407570..29409263expressed protein
LOC_Os03g51510OsAffx.3576.1.S1_s_at11/113+29413483..29416252Mitochondrial 60S ribosomal protein L6, putative, expressed
LOC_Os03g51510Os.7389.1.S1_at11/113+29413483..29416252Mitochondrial 60S ribosomal protein L6, putative, expressed
LOC_Os03g51520Os.25317.1.S1_at11/113+29418244..29428601Fip1 motif family protein, expressed
LOC_Os03g51530Os.54698.1.S1_at11/113+29429795..29430440expressed protein
LOC_Os03g51540Os.33892.2.S1_x_at10/113+29430880..29435426Lariat debranching enzyme, C-terminal domain containing protein, expressed
LOC_Os03g51540Os.33892.1.S1_at8/113+29430880..29435426Lariat debranching enzyme, C-terminal domain containing protein, expressed
LOC_Os03g51550Os.25532.1.S1_a_at10/113+29436578..29441090Will die slowly protein, putative, expressed
LOC_Os03g51556OsAffx.13459.1.S1_at10/113+29442658..29445497hypothetical protein
LOC_Os03g51562NANA3+29449881..29450079NA

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Gene Ontology Classification
GO idTypeName
GO:0008026molecular_functionATP-dependent helicase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.25317.1.S1_at--773--9291Chr03:29428002..29428026 (25 bp)
TCCCCTAATGATTCCGGTGGTCCAA
LOC_Os03g51520
Os.25317.1.S1_at--282--1511Chr03:29428085..29428109 (25 bp)
AGCAGCTGATTGGAGTTCCCTGACT
LOC_Os03g51520
Os.25317.1.S1_at--130--6931Chr03:29428112..29428136 (25 bp)
GTAGGACTGGTGCTTCGACAACAAT
LOC_Os03g51520
Os.25317.1.S1_at--926--3111Chr03:29428134..29428158 (25 bp)
AATTTCGTGGGTTCCAGGAGCTGCA
LOC_Os03g51520
Os.25317.1.S1_at--257--7791Chr03:29428173..29428197 (25 bp)
GGTGCCCCATGCAAGCAATCTTTTT
LOC_Os03g51520
Os.25317.1.S1_at--64--5471Chr03:29428206..29428230 (25 bp)
GAACTGCTGGTGATCTGGAGGCACT
LOC_Os03g51520
Os.25317.1.S1_at--78--10131Chr03:29428240..29428264 (25 bp)
TATGATTCCTGTTGCCATCTGATGT
LOC_Os03g51520
Os.25317.1.S1_at--11--2831Chr03:29428280..29428304 (25 bp)
AAGTTACCGCTTCTTGTGCATGGAA
LOC_Os03g51520
Os.25317.1.S1_at--304--2711Chr03:29428303..29428327 (25 bp)
AAGCATGGCATCTGACTGCGAGGTA
LOC_Os03g51520
Os.25317.1.S1_at--207--6951Chr03:29428325..29428349 (25 bp)
GTAGATCTTTACGACCTGGGATGAC
LOC_Os03g51520
Os.25317.1.S1_at--405--7991Chr03:29428343..29428367 (25 bp)
GGATGACTACCTACTGTGTGCCATA
LOC_Os03g51520
Target Sequence 
TCCCCTAATGATTCCGGTGGTCCAAATGTGGCGCCGGTGCCAGTGTGCCACCAAAATCAGATGGCTCCAAGCCTTTTATG
GAAAGCAGCTGATTGGAGTTCCCTGACTTGGTAGGACTGGTGCTTCGACAACAATTTCGTGGGTTCCAGGAGCTGCATTT
GAAGAAGCAGGGGTGCCCCATGCAAGCAATCTTTTTCTTGTGATGAACTGCTGGTGATCTGGAGGCACTTGATTATTGTA
TGATTCCTGTTGCCATCTGATGTTGCAGAAGCTATACCAAGTTACCGCTTCTTGTGCATGGAAGCATGGCATCTGACTGC
GAGGTAGATCTTTACGACCTGGGATGACTACCTACTGTGTGCCATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.25317.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis