Browse Element(s) Details


Os.25439.2.S1_at

Description gb:AK059551.1
DB_XREF= gi:32969569
TID=Os.25439.2
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.25439 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unknown protein (OSJNBb0048O22.2), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-029-G02, full insert sequence.
FL= gb:AK059551.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g1380011/11Ufm1-conjugating enzyme 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g13760NANA10+7241671..7245347hypothetical protein
LOC_Os10g13770Os.27088.1.A1_x_at4/1110+7247509..7254547Transposable element protein, putative, MuDR
LOC_Os10g13770Os.46012.2.S1_x_at4/1110+7247509..7254547Transposable element protein, putative, MuDR
LOC_Os10g13770Os.46012.3.S1_x_at1/1110+7247509..7254547Transposable element protein, putative, MuDR
LOC_Os10g13770OsAffx.12167.1.A1_at1/1110+7247509..7254547Transposable element protein, putative, MuDR
LOC_Os10g13780OsAffx.8356.1.S1_x_at11/1110+7256708..7257714hypothetical protein
LOC_Os10g13780OsAffx.8356.1.S1_at11/1110+7256708..7257714hypothetical protein
LOC_Os10g13790OsAffx.20604.1.S1_at11/1110+7257955..7258896hypothetical protein
LOC_Os10g13800Os.25439.1.S1_at11/1110+7261230..7264144Ufm1-conjugating enzyme 1, putative, expressed
LOC_Os10g13800Os.25439.2.S1_x_at11/1110+7261230..7264144Ufm1-conjugating enzyme 1, putative, expressed
LOC_Os10g13800Os.25439.2.S1_at11/1110+7261230..7264144Ufm1-conjugating enzyme 1, putative, expressed
LOC_Os10g13810Os.31415.1.S1_at11/1110+7264476..7268612Glycosyltransferase family 43 protein, expressed
LOC_Os10g13810OsAffx.8676.1.S1_at1/1110+7264476..7268612Glycosyltransferase family 43 protein, expressed
LOC_Os10g13820OsAffx.6667.1.S1_at6/1110+7269688..7271350hypothetical protein
LOC_Os10g13820Os.27691.2.S1_at1/1110+7269688..7271350hypothetical protein
LOC_Os10g13830Os.46553.1.S1_at11/1110+7280113..7284443ABC transporter family protein, putative, expressed
LOC_Os10g13830Os.46553.2.S1_x_at11/1110+7280113..7284443ABC transporter family protein, putative, expressed
LOC_Os10g13840OsAffx.30408.1.S1_at11/1110+7286322..7291035hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.25439.2.S1_at--1013--4111Chr10:7261965..7261989 (25 bp)
CGCTGCTTCGTAATTGTAAGTCTGT
LOC_Os10g13800
Os.25439.2.S1_at--258--4911Chr10:7261969..7261993 (25 bp)
GCTTCGTAATTGTAAGTCTGTGTCA
LOC_Os10g13800
Os.25439.2.S1_at--286--51Chr10:7261977..7262001 (25 bp)
ATTGTAAGTCTGTGTCATGTGGCTG
LOC_Os10g13800
Os.25439.2.S1_at--691--2852Chr10:7261982..7262006 (25 bp)
AAGTCTGTGTCATGTGGCTGTATCA
LOC_Os10g13800
Os.25439.2.S1_at--27--7192Chr10:7261984..7262008 (25 bp)
GTCTGTGTCATGTGGCTGTATCAGG
LOC_Os10g13800
Os.25439.2.S1_at--359--4731Chr10:7261998..7262022 (25 bp)
GCTGTATCAGGGTTGGAAATCCACC
LOC_Os10g13800
Os.25439.2.S1_at--762--7871Chr10:7262008..7262032 (25 bp)
GGTTGGAAATCCACCCAGTTGTGAA
LOC_Os10g13800
Os.25439.2.S1_at--568--8151Chr10:7262012..7262036 (25 bp)
GGAAATCCACCCAGTTGTGAACTAA
LOC_Os10g13800
Os.25439.2.S1_at--930--571Chr10:7262016..7262040 (25 bp)
ATCCACCCAGTTGTGAACTAATAAG
LOC_Os10g13800
Os.25439.2.S1_at--459--5471Chr10:7262030..7262054 (25 bp)
GAACTAATAAGAATAACACCTATAC
LOC_Os10g13800
Os.25439.2.S1_at--71--2171Chr10:7262045..7262069 (25 bp)
ACACCTATACAATGTTGATGCGCTG
LOC_Os10g13800
Target Sequence 
CGCTGCTTCGTAATTGTAAGTCTGTGTCATGTGGCTGTATCAGGGTTGGAAATCCACCCAGTTGTGAACTAATAAGAATA
ACACCTATACAATGTTGATGCGCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.25439.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis