Browse Element(s) Details


Os.25442.1.S1_at

Description gb:AK073074.1
DB_XREF= gi:32983097
TID=Os.25442.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.25442 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033015H04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033015H04, full insert sequence.
FL= gb:AK073074.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g591607/11Elongation factor P family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g59140OsAffx.22848.3.S1_x_at2/113+33606647..33611287retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g59146OsAffx.8602.1.S1_s_at11/113+33619812..33624465hypothetical protein
LOC_Os03g59146OsAffx.8602.1.S1_x_at6/113+33619812..33624465hypothetical protein
LOC_Os03g59146Os.46735.1.S1_at4/113+33619812..33624465hypothetical protein
LOC_Os03g59152OsAffx.25764.4.S1_at11/113+33624739..33626671lethal leaf spot 1, putative
LOC_Os03g59152OsAffx.2812.1.S1_at1/113+33624739..33626671lethal leaf spot 1, putative
LOC_Os03g59160Os.25442.1.S1_at7/113+33627208..33631182Elongation factor P family protein, expressed
LOC_Os03g59170Os.16646.1.A1_at11/113+33632042..33635164adenosine 5'-phosphosulfate reductase 8, putative, expressed
LOC_Os03g59180Os.31151.2.S1_at11/113+33636039..33637411expressed protein
LOC_Os03g59190OsAffx.8923.1.S1_at9/113+33641413..33646074retrotransposon protein, putative, unclassified
LOC_Os03g59190Os.51887.1.S1_x_at1/113+33641413..33646074retrotransposon protein, putative, unclassified
LOC_Os03g59200Os.49605.1.A1_at11/113+33650407..33652500expressed protein
LOC_Os03g59210Os.12392.1.S1_at4/113+33655980..33656344hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006414biological_processtranslational elongation
GO:0003746molecular_functiontranslation elongation factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.25442.1.S1_at--101--6811Chr03:33627610..33627634 (25 bp)
GTTTTGTTCTACATCTGACTTACTC
LOC_Os03g59160
Os.25442.1.S1_at--239--6631Chr03:33627581..33627605 (25 bp)
GTTGGGATACACGTGCCACTACTGA
LOC_Os03g59160
Os.25442.1.S1_at--778--2251Chr03:33627557..33627581 (25 bp)
AAATCAACCTTGCTTTTGCCGTGAA
LOC_Os03g59160
Os.25442.1.S1_at--28--2431Chr03:33627492..33627516 (25 bp)
AAAACATTGATGAGTCTGCTGCTTT
LOC_Os03g59160
Os.25442.1.S1_at--339--5591Chr03:33627467..33627491 (25 bp)
GAAATAGTTCTTACTTCCTGTTGCC
LOC_Os03g59160
Os.25442.1.S1_at--440--8811Chr03:33627449..33627473 (25 bp)
TGTTGCCCTTCTGCGATTATCTTAG
LOC_Os03g59160
Os.25442.1.S1_at--1055--6531Chr03:33627435..33627459 (25 bp)
GATTATCTTAGGTACCACCCTTTGT
LOC_Os03g59160
Os.25442.1.S1_at--46--8431Chr03:33627190..33627214 (25 bp)
GGCCTGAGGGCAATACCTGGTAGAT
NONE
Os.25442.1.S1_at--1099--3111Chr03:33627150..33627174 (25 bp)
AATTTGGTTCTCAGCTTGCATTTTC
NONE
Os.25442.1.S1_at--369--1411Chr03:33627093..33627117 (25 bp)
AGACATCACCTAGCTTCATTAATAA
NONE
Os.25442.1.S1_at--296--2831Chr03:33627055..33627079 (25 bp)
AAGTTCTGTTCTCATAGATTCTTCT
NONE
Target Sequence 
GTTTTGTTCTACATCTGACTTACTCAAAAGTTGGGATACACGTGCCACTACTGAAATCAACCTTGCTTTTGCCGTGAAAT
AATTTACTGGTTACATATAGATTAGTACTGAAAATTAGAAAACATTGATGAGTCTGCTGCTTTGAAATAGTTCTTACTTC
CTGTTGCCCTTCTGCGATTATCTTAGGTACCACCCTTTGTAGAAGCCGGTGAGAAAATTGTTGTTAGTACTGCAGATGAT
TCATATATGACGAGGGCCTGAGGGCAATACCTGGTAGATGGTGTTATTACTCCAAATTTGGTTCTCAGCTTGCATTTTCT
TGGGTAAATTTTCAACCGCCTTGTTGTAGAAAGACATCACCTAGCTTCATTAATAATTCAGTATTCAACAAGTTCTGTTC
TCATAGATTCTTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.25442.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis