Browse Element(s) Details


Os.25444.1.S1_at

Description gb:AK058942.1
DB_XREF= gi:32968960
TID=Os.25444.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.25444 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-009-H06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-009-H06, full insert sequence.
FL= gb:AK058942.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5403011/11Polygalacturonase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g54000Os.10219.1.S1_at11/112+33067266..33071309mRNA capping enzyme family protein, putative, expressed
LOC_Os02g54000Os.50124.1.S1_at1/112+33067266..33071309mRNA capping enzyme family protein, putative, expressed
LOC_Os02g54010Os.14769.1.S1_at11/112+33072442..33077687lipase class 3 family protein, putative, expressed
LOC_Os02g54020OsAffx.24860.1.S1_at11/112+33078576..33087384ATP-dependent DNA helicase, RecQ family protein, expressed
LOC_Os02g54020OsAffx.3060.1.S1_at11/112+33078576..33087384ATP-dependent DNA helicase, RecQ family protein, expressed
LOC_Os02g54020Os.50833.1.S1_at1/112+33078576..33087384ATP-dependent DNA helicase, RecQ family protein, expressed
LOC_Os02g54030Os.25444.1.S1_at11/112+33091467..33092941Polygalacturonase family protein, expressed
LOC_Os02g54030OsAffx.3061.1.S1_x_at9/112+33091467..33092941Polygalacturonase family protein, expressed
LOC_Os02g54040OsAffx.24861.1.S1_at11/112+33096757..33097035hypothetical protein
LOC_Os02g54050OsAffx.12633.1.S1_at11/112+33101876..33102544AP2 domain containing protein, expressed
LOC_Os02g54060Os.49874.2.S1_x_at11/112+33108913..3311143420 kDa chaperonin, chloroplast precursor, putative, expressed
LOC_Os02g54070OsAffx.3062.1.S1_at11/112+33112011..33117694hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0005975biological_processcarbohydrate metabolism
GO:0004650molecular_functionpolygalacturonase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.25444.1.S1_at--736--5051Chr02:33092615..33092639 (25 bp)
GCAGCAATGGTAAACAGCACGGAAG
LOC_Os02g54030
Os.25444.1.S1_at--187--2151Chr02:33092628..33092652 (25 bp)
ACAGCACGGAAGTTGATTATGACAT
LOC_Os02g54030
Os.25444.1.S1_at--441--6291Chr02:33092655..33092679 (25 bp)
GATGATATAGGTGGCTAAGGCTAAC
LOC_Os02g54030
Os.25444.1.S1_at--1011--7531Chr02:33092665..33092689 (25 bp)
GTGGCTAAGGCTAACAGCAGAACAT
LOC_Os02g54030
Os.25444.1.S1_at--308--1971Chr02:33092750..33092774 (25 bp)
ACTGTATATACATAGGAGATTCACC
LOC_Os02g54030
Os.25444.1.S1_at--57--291Chr02:33092780..33092804 (25 bp)
ATAGGTTTGAATGCAGTGGCTAATT
LOC_Os02g54030
Os.25444.1.S1_at--165--5031Chr02:33092792..33092816 (25 bp)
GCAGTGGCTAATTGTATCTCTCATT
LOC_Os02g54030
Os.25444.1.S1_at--1--10171Chr02:33092806..33092830 (25 bp)
TATCTCTCATTTCATTTGTCCACCA
LOC_Os02g54030
Os.25444.1.S1_at--592--211Chr02:33092819..33092843 (25 bp)
ATTTGTCCACCAGCATTTTGTTCTT
LOC_Os02g54030
Os.25444.1.S1_at--726--3371Chr02:33092826..33092850 (25 bp)
CACCAGCATTTTGTTCTTGCTGCCA
LOC_Os02g54030
Os.25444.1.S1_at--674--4331Chr02:33092898..33092922 (25 bp)
CCATCCCTGCCCAACTGAAAGTAAA
LOC_Os02g54030
Target Sequence 
GCAGCAATGGTAAACAGCACGGAAGTTGATTATGACATATGATGATATAGGTGGCTAAGGCTAACAGCAGAACATGGGTG
GCATTCCCATNCTCATTTTTGTTCTTTTAGTCNNTCNGTNTNTTTTTGAGATTAGAACTGTATATACATAGGAGATTCAC
CTNTTNATAGGTTTGAATGCAGTGGCTAATTGTATCTCTCATTTCATTTGTCCACCAGCATTTTGTTCTTGCTGCCAAAC
ATGTAATACAACCTTGCAATNTTAGAAATACACTTGGCCATTCACCATCCCTGCCCAACTGAAAGTAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.25444.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis