Browse Element(s) Details


Os.25453.1.A1_at

Description gb:AK105625.1
DB_XREF= gi:32990834
TID=Os.25453.1
CNT=45
FEA=FLmRNA
TIER=FL+Stack
STK=19
UG=Os.25453 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-200-C11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-200-C11, full insert sequence.
FL= gb:AK105625.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5559011/11myb-like DNA-binding domain, SHAQKYF class family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g55560Os.39067.1.A1_s_at11/113+31551386..31558473Protein kinase domain containing protein, expressed
LOC_Os03g55560Os.37832.1.S1_at11/113+31551386..31558473Protein kinase domain containing protein, expressed
LOC_Os03g55560Os.54700.1.S1_at11/113+31551386..31558473Protein kinase domain containing protein, expressed
LOC_Os03g55570Os.50269.1.S1_at11/113+31562024..31568897SWIB complex BAF60b domain-containing protein, putative, expressed
LOC_Os03g55570OsAffx.3616.1.S1_at9/113+31562024..31568897SWIB complex BAF60b domain-containing protein, putative, expressed
LOC_Os03g55590Os.25453.1.A1_at11/113+31582727..31585102myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os03g55600Os.10334.1.S1_at11/113+31591670..31597086Serine/threonine-protein kinase SAPK9, putative, expressed
LOC_Os03g55610Os.10328.1.S1_at10/113+31601273..31602898Dof domain, zinc finger family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.25453.1.A1_at--218--4611Chr03:31584312..31584336 (25 bp)
GCGAGCCATTCGATTGTACTTGTTG
LOC_Os03g55590
Os.25453.1.A1_at--888--10851Chr03:31584334..31584358 (25 bp)
TTGGTGATCTCTGGGCTTCTCAGGA
LOC_Os03g55590
Os.25453.1.A1_at--948--5331Chr03:31584357..31584381 (25 bp)
GAAGTAAGCTGCTCTCAATCCGGAT
LOC_Os03g55590
Os.25453.1.A1_at--165--5651Chr03:31584444..31584468 (25 bp)
GACAGCTGCTGCGAGGATGATGACA
LOC_Os03g55590
Os.25453.1.A1_at--269--511Chr03:31584502..31584526 (25 bp)
ATCGTGCTCGTGGAATCTTGCTAGA
LOC_Os03g55590
Os.25453.1.A1_at--1036--6591Chr03:31584537..31584561 (25 bp)
GATTGATGGATTTTCGGCTTGCGCA
LOC_Os03g55590
Os.25453.1.A1_at--649--10611Chr03:31584549..31584573 (25 bp)
TTCGGCTTGCGCATCGATGCAAAAT
LOC_Os03g55590
Os.25453.1.A1_at--783--10031Chr03:31584695..31584719 (25 bp)
TAGATGAAGAGCTGCTACCACCCAT
LOC_Os03g55590
Os.25453.1.A1_at--1112--3711Chr03:31584709..31584733 (25 bp)
CTACCACCCATGAGGCTTGCAAAGT
LOC_Os03g55590
Os.25453.1.A1_at--792--7311Chr03:31584732..31584756 (25 bp)
GTGTCGGGCAGACCCCAAATTTTCG
LOC_Os03g55590
Os.25453.1.A1_at--758--3131Chr03:31584749..31584773 (25 bp)
AATTTTCGCCCTGAGATTTACATAC
LOC_Os03g55590
Target Sequence 
GCGAGCCATTCGATTGTACTTGTTGGTGATCTCTGGGCTTCTCAGGAAGTAAGCTGCTCTCAATCCGGATCACCTCAAGG
TCCCCTTCAGCTCTCCGGCTCAGGGGTGGCCGTCTCGGCGGCCACCGCCGGCGACAGCTGCTGCGAGGATGATGACAAGT
CGGAAGGCTATGTCCGAAAATGATCGAAAGATCGTGCTCGTGGAATCTTGCTAGACAGAGAGGTAGATTGATGGATTTTC
GGCTTGCGCATCGATGCAAAATTGCCAATAATGGATTCAGAAACTCTGAGGAGGATGGTAGTGTTGGCCATGTATACAGG
GAAGATTGAGCTGTTGAGAGCTCAAGTGATGAACTGATCATGAGCTGGGTTGTTGTGGATGTGTAGATGAAGAGCTGCTA
CCACCCATGAGGCTTGCAAAGTGTCGGGCAGACCCCAAATTTTCGCCCTGAGATTTACATAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.25453.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis