Browse Element(s) Details


Os.25513.1.S1_at

Description gb:AK066479.1
DB_XREF= gi:32976497
TID=Os.25513.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.25513 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013069B01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013069B01, full insert sequence.
FL= gb:AK066479.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3354011/11transposon protein, putative, unclassified, expressed
LOC_Os06g136901/11hypothetical protein
LOC_Os10g097801/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g33480OsAffx.23491.1.S1_at11/111+18762557..18762961hypothetical protein
LOC_Os01g33490Os.53265.1.S1_at11/111+18765185..18766453F-box domain containing protein, expressed
LOC_Os01g33490OsAffx.8942.1.S1_x_at11/111+18765185..18766453F-box domain containing protein, expressed
LOC_Os01g33500NANA1+18768366..18768572hypothetical protein
LOC_Os01g33510OsAffx.2139.2.S1_at11/111+18771261..18771817hypothetical protein
LOC_Os01g33514Os.8289.1.A1_at11/111+18773839..18775776expressed protein
LOC_Os01g33520OsAffx.21182.2.S1_x_at11/111+18776842..18779899Ulp1 protease family, C-terminal catalytic domain containing protein
LOC_Os01g33520OsAffx.21182.1.S1_at11/111+18776842..18779899Ulp1 protease family, C-terminal catalytic domain containing protein
LOC_Os01g33520OsAffx.21182.2.S1_at10/111+18776842..18779899Ulp1 protease family, C-terminal catalytic domain containing protein
LOC_Os01g33520OsAffx.21182.3.S1_x_at2/111+18776842..18779899Ulp1 protease family, C-terminal catalytic domain containing protein
LOC_Os01g33530OsAffx.11302.2.S1_at11/111+18782769..18785003hypothetical protein
LOC_Os01g33530OsAffx.11302.2.S1_s_at11/111+18782769..18785003hypothetical protein
LOC_Os01g33530OsAffx.11302.1.S1_at1/111+18782769..18785003hypothetical protein
LOC_Os01g33540Os.25513.1.S1_at11/111+18786069..18789030transposon protein, putative, unclassified, expressed
LOC_Os01g33550OsAffx.23492.1.S1_at11/111+18791153..18791679hypothetical protein
LOC_Os01g33560NANA1+18798783..18799568hypothetical protein
LOC_Os01g33569OsAffx.10792.1.S1_at1/111+18802187..18802483NA
LOC_Os01g33580OsAffx.11392.1.S1_at11/111+18808964..18810421hypothetical protein
LOC_Os01g33580OsAffx.11392.4.S1_s_at11/111+18808964..18810421hypothetical protein
LOC_Os01g33580OsAffx.11392.2.S1_x_at3/111+18808964..18810421hypothetical protein
LOC_Os01g33590Os.46314.3.S1_at2/111+18812074..18815124transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g33590OsAffx.265.1.S1_at1/111+18812074..18815124transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g33590OsAffx.7362.1.S1_x_at1/111+18812074..18815124transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.25513.1.S1_at--364--1251Chr01:18786653..18786677 (25 bp)
AGTTGGTGCTTTACTGAGGCACTTA
LOC_Os01g33540
Os.25513.1.S1_at--1075--9854Chr12:2314117..2314141 (25 bp)
TACAGAATTGAGCTGCCTCCTGTGT
NONE
Os.25513.1.S1_at--414--3892Chr10:5055991..5056013 (23 bp)
CTGTGTCCTAACTTGACTGGTTGCT
NONE
Os.25513.1.S1_at--985--1951Chr01:18786480..18786504 (25 bp)
ACTGGTTGCTGCTTGGTTTCTGAAA
LOC_Os01g33540
Os.25513.1.S1_at--902--1271Chr01:18786440..18786464 (25 bp)
AGATCATGGAGTTGTGGTTTACCCT
LOC_Os01g33540
Os.25513.1.S1_at--144--8633Chr10:5056078..5056098 (21 bp)
TGGTGGTCAGTAGCTCCTCCTGCAG
LOC_Os10g09780
Os.25513.1.S1_at--851--3391Chr01:18786361..18786385 (25 bp)
CAGCATAACTGTGGCGCACCTGGCT
LOC_Os01g33540
Os.25513.1.S1_at--1154--6571Chr01:18786326..18786350 (25 bp)
GATTCCGACGGAAGCACACAGTTTT
LOC_Os01g33540
Os.25513.1.S1_at--391--2191Chr01:18786311..18786335 (25 bp)
ACACAGTTTTGTTGATTGCGTTGCA
LOC_Os01g33540
Os.25513.1.S1_at--961--4871Chr01:18786151..18786175 (25 bp)
GCTTTAATGGTGCTGTTGGCTAGAA
LOC_Os01g33540
Os.25513.1.S1_at--5--3011Chr01:18786128..18786152 (25 bp)
AATGATGCTGTCGTTGATTCTGGAA
LOC_Os01g33540
Target Sequence 
AGTTGGTGCTTTACTGAGGCACTTAATTTATTTTACATGTGTACAGAGGCAAATAAGCTGAAATGCTTTAGAACTATAAA
ACAATTCTTTGACAGAAACATTACAGAATTGAACTTGATTTATTCCAATTTCAGAAAATTACAGAATTGAGCTGCCTCCT
GTGTCCTAACTTGACTGGTTGCTGCTTGGTTTCTGAAATTAGGTCCTGGATGAAGATCATGGAGTTGTGGTTTACCCTGT
CTGGTGGTCAGTAGCTCCTCCTGCAGTTCAACGTTGGGGCGACGTCCCTGGGCAGCATAACTGTGGCGCACCTGGCTGCC
CTGAGATGATTCCGACGGAAGCACACAGTTTTGTTGATTGCGTTGCAAGGCTGCAGTTCATTGCTGATTATTTATTATTA
AAGGAGTGTAATGAACAAATAAATTTAGTGGCCTTTTTAAATATTAGGAATAAATGATCTGCAACTAGAATGGTGACTTC
ATTTTGGTGATGGTTGTGTGATGCTTTAATGGTGCTGTTGGCTAGAATGATGCTGTCGTTGATTCTGGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.25513.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis