Browse Element(s) Details


Os.25530.1.S1_at

Description gb:AK073502.1
DB_XREF= gi:32983525
TID=Os.25530.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.25530 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033046F18, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033046F18, full insert sequence.
FL= gb:AK121876.1 gb:AK073502.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4343011/11pentatricopeptide, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g43410Os.27019.1.S1_at11/114+25462227..25466604Glycosyl hydrolase family 1 protein, expressed
LOC_Os04g43420Os.12126.2.S1_at11/114+25481930..25484231peptidoglycan-binding domain-containing protein, putative, expressed
LOC_Os04g43430Os.25530.1.S1_at11/114+25483280..25488332pentatricopeptide, putative, expressed
LOC_Os04g43430Os.25530.1.S2_at11/114+25483280..25488332pentatricopeptide, putative, expressed
LOC_Os04g43440OsAffx.26443.1.S1_s_at11/114+25489213..25493439NB-ARC domain containing protein, expressed
LOC_Os04g43450OsAffx.4075.1.S1_at11/114+25494457..25495836hypothetical protein
LOC_Os04g43464OsAffx.22722.1.S1_at6/114+25496762..25503084retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g43464OsAffx.988.1.S1_at2/114+25496762..25503084retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g43464OsAffx.22722.1.S1_x_at2/114+25496762..25503084retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g43480OsAffx.20628.2.S1_at3/114+25503987..25506917retrotransposon protein, putative, unclassified
LOC_Os04g43480OsAffx.20628.2.S1_x_at3/114+25503987..25506917retrotransposon protein, putative, unclassified
LOC_Os04g43480OsAffx.20628.1.S1_at2/114+25503987..25506917retrotransposon protein, putative, unclassified
LOC_Os04g43480OsAffx.10496.1.S1_at1/114+25503987..25506917retrotransposon protein, putative, unclassified
LOC_Os04g43480OsAffx.2442.1.S1_x_at1/114+25503987..25506917retrotransposon protein, putative, unclassified
LOC_Os04g43490Os.8244.1.S1_at11/114+25508412..25512689Casein kinase I, epsilon isoform, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.25530.1.S1_at--616--1891Chr04:25487020..25487044 (25 bp)
ACGTTTGTCAGTATTCTTGGTGCAT
LOC_Os04g43430
Os.25530.1.S1_at--708--3491Chr04:25486998..25487022 (25 bp)
CATGCACCTACTTGAGTTCCTTTTA
LOC_Os04g43430
Os.25530.1.S1_at--823--3311Chr04:25486857..25486881 (25 bp)
CACTATTCAGTCTAATCCCTTACAA
LOC_Os04g43430
Os.25530.1.S1_at--507--7951Chr04:25486832..25486856 (25 bp)
GGATAGTATATCCTGGAATGCCCTT
LOC_Os04g43430
Os.25530.1.S1_at--46--611Chr04:25486815..25486839 (25 bp)
ATGCCCTTACAGTAGGACTTGCACA
LOC_Os04g43430
Os.25530.1.S1_at--499--6211Chr04:25486748..25486772 (25 bp)
GAGGCTGCATGGTATAACACCCGAT
LOC_Os04g43430
Os.25530.1.S1_at--919--6291Chr04:25486726..25486750 (25 bp)
GATGATGTATCTTTTTCTACTGCAA
LOC_Os04g43430
Os.25530.1.S1_at--553--10791Chr04:25486694..25486718 (25 bp)
TTGTTCCAATATCCGAGCCACTGAA
LOC_Os04g43430
Os.25530.1.S1_at--111--5571Chr04:25486665..25486689 (25 bp)
GAAAGCAGATCCATTGCCTGGCCAT
LOC_Os04g43430
Os.25530.1.S1_at--946--7851Chr04:25486633..25486657 (25 bp)
GGTATCTGCTCAAATCATGCTGTTG
LOC_Os04g43430
Os.25530.1.S1_at--679--3871Chr04:25486614..25486638 (25 bp)
CTGTTGGTAGCTCTCTGATTGACTT
LOC_Os04g43430
Target Sequence 
ACGTTTGTCAGTATTCTTGGTGCATGCACCTACTTGAGTTCCTTTTATCTGGGAAAACAAGTACATTGTGTAACAATCAA
GAACTGCATGGATATAAGCTTGTTTGTTGCTAATGCAACACTAGATATGTACTCAAAATATGGAGCAATTGGTGATGCAA
AGGCACTATTCAGTCTAATCCCTTACAAGGATAGTATATCCTGGAATGCCCTTACAGTAGGACTTGCACAGAACCTAGAG
GAGGAAGAAGCAGTGTGTATGCTCAAAAGGATGAGGCTGCATGGTATAACACCCGATGATGTATCTTTTTCTACTGCAAT
TAATGCTTGTTCCAATATCCGAGCCACTGAAACTGGAAAGCAGATCCATTGCCTGGCCATCAAATATGGTATCTGCTCAA
ATCATGCTGTTGGTAGCTCTCTGATTGACTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.25530.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis