Browse Element(s) Details


Os.25530.1.S2_at

Description gb:AK121876.1
DB_XREF= gi:37991499
TID=Os.25530.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.25530 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033046F18, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033104I01, full insert sequence.
FL= gb:AK121876.1 gb:AK073502.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4343011/11pentatricopeptide, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g43410Os.27019.1.S1_at11/114+25462227..25466604Glycosyl hydrolase family 1 protein, expressed
LOC_Os04g43420Os.12126.2.S1_at11/114+25481930..25484231peptidoglycan-binding domain-containing protein, putative, expressed
LOC_Os04g43430Os.25530.1.S1_at11/114+25483280..25488332pentatricopeptide, putative, expressed
LOC_Os04g43430Os.25530.1.S2_at11/114+25483280..25488332pentatricopeptide, putative, expressed
LOC_Os04g43440OsAffx.26443.1.S1_s_at11/114+25489213..25493439NB-ARC domain containing protein, expressed
LOC_Os04g43450OsAffx.4075.1.S1_at11/114+25494457..25495836hypothetical protein
LOC_Os04g43464OsAffx.22722.1.S1_at6/114+25496762..25503084retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g43464OsAffx.988.1.S1_at2/114+25496762..25503084retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g43464OsAffx.22722.1.S1_x_at2/114+25496762..25503084retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g43480OsAffx.20628.2.S1_at3/114+25503987..25506917retrotransposon protein, putative, unclassified
LOC_Os04g43480OsAffx.20628.2.S1_x_at3/114+25503987..25506917retrotransposon protein, putative, unclassified
LOC_Os04g43480OsAffx.20628.1.S1_at2/114+25503987..25506917retrotransposon protein, putative, unclassified
LOC_Os04g43480OsAffx.10496.1.S1_at1/114+25503987..25506917retrotransposon protein, putative, unclassified
LOC_Os04g43480OsAffx.2442.1.S1_x_at1/114+25503987..25506917retrotransposon protein, putative, unclassified
LOC_Os04g43490Os.8244.1.S1_at11/114+25508412..25512689Casein kinase I, epsilon isoform, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.25530.1.S2_at--727--7791Chr04:25483944..25483968 (25 bp)
GGTCCAGCACGTTGCTTAGTTCGTG
LOC_Os04g43430
Os.25530.1.S2_at--502--10451Chr04:25483929..25483953 (25 bp)
TTAGTTCGTGGCTACTGTCTTCCCT
LOC_Os04g43430
Os.25530.1.S2_at--413--2691Chr04:25483595..25483619 (25 bp)
AAGCAGCAAATGTTATTACCTACGC
LOC_Os04g43430
Os.25530.1.S2_at--993--3651Chr04:25483558..25483582 (25 bp)
CTTCACCCCGACAAGAGATGCACTT
LOC_Os04g43430
Os.25530.1.S2_at--398--6651Chr04:25483529..25483553 (25 bp)
GTTGATGCATTGGTAGCGCTGCTGA
LOC_Os04g43430
Os.25530.1.S2_at--1024--4571Chr04:25483514..25483538 (25 bp)
GCGCTGCTGATTGGTTTATTCTTCT
LOC_Os04g43430
Os.25530.1.S2_at--9--8691Chr04:25483490..25483514 (25 bp)
TGTGTTAGCCTAGATGGGTCTTCCC
LOC_Os04g43430
Os.25530.1.S2_at--1100--2151Chr04:25483412..25483436 (25 bp)
ACACCATTTCCTTTCACAACAGTTT
LOC_Os04g43430
Os.25530.1.S2_at--496--10351Chr04:25483343..25483367 (25 bp)
TTTATGCCATCCTACAAGAGAGTTG
LOC_Os04g43430
Os.25530.1.S2_at--89--411Chr04:25483309..25483333 (25 bp)
ATCATGCCATGACTACAGGTACTGC
LOC_Os04g43430
Os.25530.1.S2_at--233--7851Chr04:25483292..25483316 (25 bp)
GGTACTGCTTATCGCTTGAACTTTC
LOC_Os04g43430
Target Sequence 
GGTCCAGCACGTTGCTTAGTTCGTGGCTACTGTCTTCCCTTCACAAACATCACATACAATTGANCCAAGGCCTNTCNCAG
TATGGACACTTNGTATNTTCACCGNCCCNCTCCAAAAACTGCATTNTGAGGGGTNANCAGAAAGGAAGAAAGAAAAAGGT
CTTGTCAGGAGTNGCAACTCNCAAGCAGCTCATTTCTCAATACATTACAAATGCTGNACATGTTGTGCCACCAAGCAGCA
AATGTTATTACCTACGCNCATGAGGCGGCCTTCACCCCGACAAGAGATGCACTTNTTAGTTGATGCATTGGTAGCGCTGC
TGATTGGTTTATTCTTCTGTGTTAGCCTAGATGGGTCTTCCCNCCTGTTTTCACCGATGAGAAACACTCTATTTTCAGAC
AACCCTNNTCCTGAGACACCATTTCCTTTCACAACAGTTTGTTGAATCTCTGCAATTTNTGTTATGGAGGGAATGGCTGC
TCCATTTATGCCATCCTACAAGAGAGTTGGATTAGAATATCATGCCATGACTACAGGTACTGCTTATCGCTTGAACTTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.25530.1.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis