Browse Element(s) Details


Os.25625.1.S1_at

Description gb:AK062577.1
DB_XREF= gi:32972595
TID=Os.25625.1
CNT=15
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.25625 (NCBI UniGene Cluster)
UG_TITLE=Unknown mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-047-D09, full insert sequence.
FL= gb:AK062577.1 gb:AK099051.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1531010/11RNA recognition motif family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g15260OsAffx.12051.1.S1_s_at11/112+8525127..8531124hypothetical protein
LOC_Os02g15260Os.52126.1.S1_at10/112+8525127..8531124hypothetical protein
LOC_Os02g15260OsAffx.12051.1.S1_at9/112+8525127..8531124hypothetical protein
LOC_Os02g15270Os.54097.1.A1_at11/112+8536373..8538482Tyrosine-protein phosphatase YVH1, putative, expressed
LOC_Os02g15270Os.34341.1.S1_at1/112+8536373..8538482Tyrosine-protein phosphatase YVH1, putative, expressed
LOC_Os02g15280OsAffx.12052.1.S1_at11/112+8539272..8539622VQ motif family protein
LOC_Os02g15290Os.56119.1.S1_at11/112+8541337..8542124VQ motif family protein, expressed
LOC_Os02g15300NANA2+8543244..8543504hypothetical protein
LOC_Os02g15310Os.25625.1.S1_at10/112+8553872..8558161RNA recognition motif family protein, expressed
LOC_Os02g15320NANA2+8565851..8569181transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g15330Os.47463.1.S1_x_at6/112+8571791..8575489transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g15330Os.14491.2.S1_x_at5/112+8571791..8575489transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g15340Os.51831.1.S1_at11/112+8582542..8584531No apical meristem protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0000398biological_processnuclear mRNA splicing, via spliceosome
GO:0016607cellular_componentnuclear speck
GO:0035061cellular_componentinterchromatin granule
GO:0003723molecular_functionRNA binding
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.25625.1.S1_at--265--9271Chr02:8554194..8554218 (25 bp)
TCCTGCCCGCAGTGACTAACAGAAG
LOC_Os02g15310
Os.25625.1.S1_at--1119--2091Chr02:8554149..8554173 (25 bp)
ACATCCTCTCTAGCTTCTTGTTGGT
LOC_Os02g15310
Os.25625.1.S1_at--444--3011Chr02:8554072..8554096 (25 bp)
AATGCTAGCATCTGTCGTGGTTTGG
LOC_Os02g15310
Os.25625.1.S1_at--455--8011Chr02:8554043..8554067 (25 bp)
GGAGGACTTGGATCGTCACCATTGT
LOC_Os02g15310
Os.25625.1.S1_at--743--8671Chr02:8554019..8554043 (25 bp)
TGTGTGCTCGCTTCTCAGTGGATGG
LOC_Os02g15310
Os.25625.1.S1_at--230--5551Chr02:8553971..8553995 (25 bp)
GAAACCTTAGACTTGCTGCATGGCA
LOC_Os02g15310
Os.25625.1.S1_at--920--2391Chr02:8553934..8553958 (25 bp)
AAACTTATCCGTATGCCTTGTGTAT
LOC_Os02g15310
Os.25625.1.S1_at--514--9591Chr02:8553909..8553933 (25 bp)
TCTTGTGCTTGCCATGTGCTCATGC
LOC_Os02g15310
Os.25625.1.S1_at--937--7311Chr02:8553894..8553918 (25 bp)
GTGCTCATGCGCTTGAATTGCTGTG
LOC_Os02g15310
Os.25625.1.S1_at--301--3171Chr02:8553879..8553903 (25 bp)
AATTGCTGTGCACGCGGAGTCGAAC
LOC_Os02g15310
Os.25625.1.S1_at--1013--5471Chr02:8553858..8553882 (25 bp)
GAACTATGCCGTCGACTTCTTTTGG
NONE
Target Sequence 
TCCTGCCCGCAGTGACTAACAGAAGAACACTGCGCACGCNGTGCTACATCCTCTCTAGCTTCTTGTTGGTCAGACCGGAC
CAGTTTAAGTAAAAACCCTTTTGGGCTTGTTGTAAAACTTGTAATGCTAGCATCTGTCGTGGTTTGGTAGCGGAGGACTT
GGATCGTCACCATTGTGTGTGCTCGCTTCTCAGTGGATGGAGACATTTTGAGTCGTGTGTGATGAAACCTTAGACTTGCT
GCATGGCATTGTATTGTGTTAAACTTATCCGTATGCCTTGTGTATTCTTGTGCTTGCCATGTGCTCATGCGCTTGAATTG
CTGTGCACGCGGAGTCGAACTATGCCGTCGACTTCTTTTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.25625.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis