Browse Element(s) Details


OsAffx.12052.1.S1_at

Description tigr:9630.m01430
TID=OsAffx.12052.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1528011/11VQ motif family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g15240OsAffx.13097.1.S1_s_at11/112+8508503..8515678hypothetical protein
LOC_Os02g15240Os.46613.1.S2_at4/112+8508503..8515678hypothetical protein
LOC_Os02g15250OsAffx.12050.1.S1_at11/112+8516794..8518231Late embryogenesis abundant protein, expressed
LOC_Os02g15260OsAffx.12051.1.S1_s_at11/112+8525127..8531124hypothetical protein
LOC_Os02g15260Os.52126.1.S1_at10/112+8525127..8531124hypothetical protein
LOC_Os02g15260OsAffx.12051.1.S1_at9/112+8525127..8531124hypothetical protein
LOC_Os02g15270Os.54097.1.A1_at11/112+8536373..8538482Tyrosine-protein phosphatase YVH1, putative, expressed
LOC_Os02g15270Os.34341.1.S1_at1/112+8536373..8538482Tyrosine-protein phosphatase YVH1, putative, expressed
LOC_Os02g15280OsAffx.12052.1.S1_at11/112+8539272..8539622VQ motif family protein
LOC_Os02g15290Os.56119.1.S1_at11/112+8541337..8542124VQ motif family protein, expressed
LOC_Os02g15300NANA2+8543244..8543504hypothetical protein
LOC_Os02g15310Os.25625.1.S1_at10/112+8553872..8558161RNA recognition motif family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12052.1.S1_at--616--2591Chr02:8539487..8539511 (25 bp)
AACGACGCAGCCGTTGCGACCGCGC
LOC_Os02g15280
OsAffx.12052.1.S1_at--1124--5971Chr02:8539331..8539355 (25 bp)
GAGACTTGCGACCTCGCCGATATGC
LOC_Os02g15280
OsAffx.12052.1.S1_at--505--5691Chr02:8539329..8539353 (25 bp)
GACTTGCGACCTCGCCGATATGCTG
LOC_Os02g15280
OsAffx.12052.1.S1_at--441--9151Chr02:8539325..8539349 (25 bp)
TGCGACCTCGCCGATATGCTGTGCG
LOC_Os02g15280
OsAffx.12052.1.S1_at--190--4611Chr02:8539324..8539348 (25 bp)
GCGACCTCGCCGATATGCTGTGCGT
LOC_Os02g15280
OsAffx.12052.1.S1_at--774--1751Chr02:8539321..8539345 (25 bp)
ACCTCGCCGATATGCTGTGCGTCGA
LOC_Os02g15280
OsAffx.12052.1.S1_at--1066--3791Chr02:8539319..8539343 (25 bp)
CTCGCCGATATGCTGTGCGTCGATG
LOC_Os02g15280
OsAffx.12052.1.S1_at--545--9331Chr02:8539318..8539342 (25 bp)
TCGCCGATATGCTGTGCGTCGATGT
LOC_Os02g15280
OsAffx.12052.1.S1_at--109--4511Chr02:8539316..8539340 (25 bp)
GCCGATATGCTGTGCGTCGATGTCG
LOC_Os02g15280
OsAffx.12052.1.S1_at--455--6511Chr02:8539313..8539337 (25 bp)
GATATGCTGTGCGTCGATGTCGCCG
LOC_Os02g15280
OsAffx.12052.1.S1_at--145--271Chr02:8539312..8539336 (25 bp)
ATATGCTGTGCGTCGATGTCGCCGC
LOC_Os02g15280
Target Sequence 
AACGACGCAGCCGTTGCGACCGCGCCGTCGCTCGAGAGGCCGCGGCCGTGCCGGCGGGGGGTCGACGGGTGGAGGGGAGC
CGAGGCGACGGTGGGGGTGGGGCTGCCGGCGGCGCCGGCGCCGTGGATGGATGAGATTGAGATGATGATGCTGTACGAGA
CTTGCGACCTCGCCGATATGCTGTGCGTCGATGTCGCCGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12052.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis