Browse Element(s) Details


Os.54097.1.A1_at

Description gb:AK101906.1
DB_XREF= gi:32987115
TID=Os.54097.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54097 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033071E07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033071E07, full insert sequence.
FL= gb:AK101906.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1527011/11Tyrosine-protein phosphatase YVH1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g15240OsAffx.13097.1.S1_s_at11/112+8508503..8515678hypothetical protein
LOC_Os02g15240Os.46613.1.S2_at4/112+8508503..8515678hypothetical protein
LOC_Os02g15250OsAffx.12050.1.S1_at11/112+8516794..8518231Late embryogenesis abundant protein, expressed
LOC_Os02g15260OsAffx.12051.1.S1_s_at11/112+8525127..8531124hypothetical protein
LOC_Os02g15260Os.52126.1.S1_at10/112+8525127..8531124hypothetical protein
LOC_Os02g15260OsAffx.12051.1.S1_at9/112+8525127..8531124hypothetical protein
LOC_Os02g15270Os.54097.1.A1_at11/112+8536373..8538482Tyrosine-protein phosphatase YVH1, putative, expressed
LOC_Os02g15270Os.34341.1.S1_at1/112+8536373..8538482Tyrosine-protein phosphatase YVH1, putative, expressed
LOC_Os02g15280OsAffx.12052.1.S1_at11/112+8539272..8539622VQ motif family protein
LOC_Os02g15290Os.56119.1.S1_at11/112+8541337..8542124VQ motif family protein, expressed
LOC_Os02g15300NANA2+8543244..8543504hypothetical protein
LOC_Os02g15310Os.25625.1.S1_at10/112+8553872..8558161RNA recognition motif family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54097.1.A1_at--19--2191Chr02:8537673..8537697 (25 bp)
ACACTCGTCGCTACTGAAGGCTATG
LOC_Os02g15270
Os.54097.1.A1_at--39--8911Chr02:8537723..8537747 (25 bp)
TGAGAAGTGCTTCGCGACGCGCAAA
LOC_Os02g15270
Os.54097.1.A1_at--741--5271Chr02:8537775..8537799 (25 bp)
GAATGTACCTGCCTCTTTGTGGAGC
LOC_Os02g15270
Os.54097.1.A1_at--141--8091Chr02:8537795..8537819 (25 bp)
GGAGCCCTTGAAGTGGATGCAACCT
LOC_Os02g15270
Os.54097.1.A1_at--6--10171Chr02:8538097..8538121 (25 bp)
TATTTCAGGGAAGATCGCGTGCAGG
LOC_Os02g15270
Os.54097.1.A1_at--984--13Chr11:27282891..27282910 (20 bp)
ATTGGGACAATTCCACTGGGCAGGA
NONE
Os.54097.1.A1_at--863--3291Chr02:8538240..8538264 (25 bp)
CAGTCGGGTGACTCAACTTCAACTT
LOC_Os02g15270
Os.54097.1.A1_at--994--511Chr02:8538278..8538302 (25 bp)
ATCGCAATCATACCCAGCTGTAGGA
LOC_Os02g15270
Os.54097.1.A1_at--651--8991Chr02:8538321..8538345 (25 bp)
TGAAGCTTCTATAGGCACTCTGGTA
LOC_Os02g15270
Os.54097.1.A1_at--405--2991Chr02:8538366..8538390 (25 bp)
AATGTAAGTCTTTGCAGTCCGCACC
LOC_Os02g15270
Os.54097.1.A1_at--1100--3431Chr02:8538394..8538418 (25 bp)
CAGATTCAGTGTTTCCTTAGTTGCA
LOC_Os02g15270
Target Sequence 
ACACTCGTCGCTACTGAAGGCTATGTNGTTACCCACNAAGTTGGTCGTGGTGAGAAGTGCTTCGCGACGCGCAAAAAGTA
TCATGTGGATGAGAAGGAACCCGAATGTACCTGCCTCTTTGTGGAGCCCTTGAAGTGGATGCAACCTGTGGTGGAAGGAT
ATATTTCAGGGAAGATCGCGTGCAGGAAATGCAACAGCCGATTGGGACAATTCCACTGGGCAGGAATGCAGTGCAGCTGC
GGAGCCTGGGTGAATCCAGCNTTCCAGCTGGTCAAGAGCAAGATTGATCAGTGTGAGATGTGATCAGTCGGGTGACTCAA
CTTCAACTTCATTATCAGTGACATCGCAATCATACCCAGCTGTAGGAAACATTATTATTTCCTTCTGAAGCTTCTATAGG
CACTCTGGTAGTAAGTTTTGCTGTCTACTAAATGTAAGTCTTTGCAGTCCGCACCATTCAGATTCAGTGTTTCCTTAGTT
GCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54097.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis