Browse Element(s) Details


Os.52126.1.S1_at

Description gb:AK064942.1
DB_XREF= gi:32974960
TID=Os.52126.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52126 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013000P09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013000P09, full insert sequence.
FL= gb:AK064942.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1526010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g15230Os.7804.1.S1_at11/112+8501518..8504975GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os02g15240OsAffx.13097.1.S1_s_at11/112+8508503..8515678hypothetical protein
LOC_Os02g15240Os.46613.1.S2_at4/112+8508503..8515678hypothetical protein
LOC_Os02g15250OsAffx.12050.1.S1_at11/112+8516794..8518231Late embryogenesis abundant protein, expressed
LOC_Os02g15260OsAffx.12051.1.S1_s_at11/112+8525127..8531124hypothetical protein
LOC_Os02g15260Os.52126.1.S1_at10/112+8525127..8531124hypothetical protein
LOC_Os02g15260OsAffx.12051.1.S1_at9/112+8525127..8531124hypothetical protein
LOC_Os02g15270Os.54097.1.A1_at11/112+8536373..8538482Tyrosine-protein phosphatase YVH1, putative, expressed
LOC_Os02g15270Os.34341.1.S1_at1/112+8536373..8538482Tyrosine-protein phosphatase YVH1, putative, expressed
LOC_Os02g15280OsAffx.12052.1.S1_at11/112+8539272..8539622VQ motif family protein
LOC_Os02g15290Os.56119.1.S1_at11/112+8541337..8542124VQ motif family protein, expressed
LOC_Os02g15300NANA2+8543244..8543504hypothetical protein
LOC_Os02g15310Os.25625.1.S1_at10/112+8553872..8558161RNA recognition motif family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52126.1.S1_at--418--5431Chr02:8528674..8528698 (25 bp)
GAACCGGATGTTGTATGTGGTCCCT
LOC_Os02g15260
Os.52126.1.S1_at--915--8751Chr02:8528685..8528709 (25 bp)
TGTATGTGGTCCCTTGCAGATGATA
LOC_Os02g15260
Os.52126.1.S1_at--503--10391Chr02:8528751..8528775 (25 bp)
TTTTGTCCATGTCCTTTTGAACTCT
LOC_Os02g15260
Os.52126.1.S1_at--321--6871Chr02:8528874..8528898 (25 bp)
GTTTGGATCATTTGCTACAACATTT
LOC_Os02g15260
Os.52126.1.S1_at--6--3271Chr02:8528891..8528915 (25 bp)
CAACATTTTAGCACTCCGTATAATT
LOC_Os02g15260
Os.52126.1.S1_at--629--1171Chr02:8528922..8528946 (25 bp)
AGTAATTTTTGACTGTGTATGCTCA
LOC_Os02g15260
Os.52126.1.S1_at--63--211NONE
ATATTCCAAAGGTTGATTGCGCTGA
NONE
Os.52126.1.S1_at--581--6591Chr02:8529008..8529032 (25 bp)
GATTGCGCTGATGTATGTTTGTGAG
LOC_Os02g15260
Os.52126.1.S1_at--62--9931Chr02:8529122..8529146 (25 bp)
TACTGTGGGCATGTCATGTTTAACC
LOC_Os02g15260
Os.52126.1.S1_at--653--1731Chr02:8529144..8529168 (25 bp)
ACCTTCTTAGGTAGCTACTTGACAA
LOC_Os02g15260
Os.52126.1.S1_at--698--5611Chr02:8529164..8529188 (25 bp)
GACAAGCTTCTCCATGCAAATTATA
LOC_Os02g15260
Target Sequence 
GAACCGGATGTTGTATGTGGTCCCTTGCAGATGATATTTCTGTCTTATATTCCATAAACACAGTGAAAAGCTGGAAATTT
TGTCCATGTCCTTTTGAACTCTTTTTGTTTGTTTCCATCAGTTTAGTTTCAGTGAAACTGTTTCCTTTGAGCATGCATCC
AATTAGCATACATGTAACATTTGGTAAAAGGTAAATATTTGTTTGGATCATTTGCTACAACATTTTAGCACTCCGTATAA
TTATTAAAAGTAATTTTTGACTGTGTATGCTCAGAGAGAGAGAGAGAGAGAGAGTCATCTAATAGAATTTGCAAAATTAA
ATATTCCAAAGGTTGATTGCGCTGATGTATGTTTGTGAGCAGAGGGATTATGTCATAGTGGGATGCAGTGCATAGTAATC
TAATGGTATGTTGAAATAATCTAATGAGGTGAACACATGCACAGAAAATACTGTGGGCATGTCATGTTTAACCTTCTTAG
GTAGCTACTTGACAAGCTTCTCCATGCAAATTATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52126.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis