Browse Element(s) Details


Os.25740.1.S1_at

Description gb:AK106630.1
DB_XREF= gi:32991839
TID=Os.25740.1
CNT=11
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.25740 (NCBI UniGene Cluster)
UG_TITLE=Cone SR1 sucrose-regulated mRNA, 3-end sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-113-D01, full insert sequence.
FL= gb:AK106630.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g065901/11expressed protein
LOC_Os11g202391/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g06550NANA4+3432441..3435185retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g06560Os.40360.1.S1_at8/114+3438150..3440023hypothetical protein
LOC_Os04g06560Os.40855.2.S1_x_at7/114+3438150..3440023hypothetical protein
LOC_Os04g06560Os.40360.1.S1_x_at7/114+3438150..3440023hypothetical protein
LOC_Os04g06560Os.40855.4.S1_x_at4/114+3438150..3440023hypothetical protein
LOC_Os04g06560Os.40855.4.S1_at1/114+3438150..3440023hypothetical protein
LOC_Os04g06560Os.40855.5.S1_x_at1/114+3438150..3440023hypothetical protein
LOC_Os04g06580NANA4+3450136..3450606retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g06590Os.26930.1.S2_x_at11/114+3452396..3457830expressed protein
LOC_Os04g06590OsAffx.25891.1.S1_at11/114+3452396..3457830expressed protein
LOC_Os04g06590Os.26930.1.S1_x_at11/114+3452396..3457830expressed protein
LOC_Os04g06590Os.25740.1.S1_at1/114+3452396..3457830expressed protein
LOC_Os04g06590Os.46050.1.A1_x_at1/114+3452396..3457830expressed protein
LOC_Os04g06600NANA4+3464714..3467606retrotransposon protein, putative, unclassified
LOC_Os04g06610NANA4+3467928..3473315retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g06620NANA4+3474945..3475736retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g06630Os.46306.1.S1_x_at2/114+3478780..3482974transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.25740.1.S1_at--292--10297Chr09:7085693..7085714 (22 bp)
TTTAGTCGGATCCAAGTTATTAGTT
NONE
Os.25740.1.S1_at--705--10431Chr07:26101065..26101089 (25 bp)
TTAGGACCCGACATTTAGCAAGAGC
NONE
Os.25740.1.S1_at--1141--5131NONE
GCAAGAGCGGAACCAACTTATAAAG
NONE
Os.25740.1.S1_at--465--2071Chr07:26101023..26101047 (25 bp)
ACTTGTTCCTCTAATCATGTCACTC
NONE
Os.25740.1.S1_at--309--9712Chr09:11526786..11526805 (20 bp)
TAATCATGTCACTCCTGGGTTAACC
NONE
Os.25740.1.S1_at--382--8591Chr07:26100951..26100975 (25 bp)
TGGTATGTGTAAATGGGCTCGCCTA
NONE
Os.25740.1.S1_at--509--7431Chr07:26100945..26100969 (25 bp)
GTGTAAATGGGCTCGCCTATCGAAT
NONE
Os.25740.1.S1_at--478--7852Chr07:26100904..26100928 (25 bp)
GGTATGTATAAGTGGGCTCGCCCGT
NONE
Os.25740.1.S1_at--1099--4531Chr07:26100885..26100909 (25 bp)
GCCCGTCGGATGACCATTGAACCAA
NONE
Os.25740.1.S1_at--75--6651Chr07:26100845..26100869 (25 bp)
GTTGTTATCCTTTCTATGACTCCAC
NONE
Os.25740.1.S1_at--157--691Chr07:26100830..26100854 (25 bp)
ATGACTCCACTGTTGTTGACGAAAA
NONE
Target Sequence 
TTTAGTCGGATCCAAGTTATTAGTTTTAGGACCCGACATTTAGCAAGAGCGGAACCAACTTATAAAGACTTGTTCCTCTA
ATCATGTCACTCCTGGGTTAACCCTTTTACACGAAACAAGGATAAAAGAGTAAGAGAGGTGGTATGTGTAAATGGGCTCG
CCTATCGAATGGGGAGTAAGAGAGGTGGTATGTATAAGTGGGCTCGCCCGTCGGATGACCATTGAACCAAGATTTGAGGA
ACAATGTTGTTATCCTTTCTATGACTCCACTGTTGTTGACGAAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.25740.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis