Browse Element(s) Details


Os.25771.1.S1_at

Description gb:AB083582.1
DB_XREF= gi:28875522
GEN=OsAMT2;2
TID=Os.25771.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.25771 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) OsAMT2;2 mRNA for ammonium transporter, complete cds.
PROD=ammonium transporter
FL= gb:AB083582.1 gb:AK120352.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g650009/11Ammonium transporter 2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g64970Os.12646.1.S1_at11/111+38037090..38041730Serine/threonine-protein kinase SAPK7, putative, expressed
LOC_Os01g64980Os.32637.1.S1_at11/111+38041706..38047501Ion channel DMI1, chloroplast precursor, putative, expressed
LOC_Os01g64980Os.32637.2.S1_at11/111+38041706..38047501Ion channel DMI1, chloroplast precursor, putative, expressed
LOC_Os01g64980Os.32637.3.S1_x_at11/111+38041706..38047501Ion channel DMI1, chloroplast precursor, putative, expressed
LOC_Os01g64990Os.46001.1.S1_at11/111+38049159..38058754GPI transamidase subunit PIG-U family protein, expressed
LOC_Os01g64990OsAffx.2410.1.A1_x_at11/111+38049159..38058754GPI transamidase subunit PIG-U family protein, expressed
LOC_Os01g65000Os.25771.1.S1_at9/111+38062129..38064490Ammonium transporter 2, putative, expressed
LOC_Os01g65010OsAffx.29815.1.S1_x_at1/111+38066314..38069570D-mannose binding lectin family protein, expressed
LOC_Os01g65030Os.52175.1.S1_at11/111+38072375..38075424D-mannose binding lectin family protein, expressed
LOC_Os01g65030OsAffx.11739.1.S1_x_at2/111+38072375..38075424D-mannose binding lectin family protein, expressed
LOC_Os01g65040OsAffx.11739.1.S1_x_at11/111+38079472..38079912hypothetical protein
LOC_Os01g65050NANA1+38084519..38085268hypothetical protein
LOC_Os01g65060NANA1+38087406..38089148S-domain receptor-like protein kinase, putative

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006810biological_processtransport
GO:0015696biological_processammonium transport
GO:0005886cellular_componentplasma membrane
GO:0016020cellular_componentmembrane
GO:0008519molecular_functionammonium transporter activity
GO:0015398molecular_functionhigh affinity ammonium transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.25771.1.S1_at--103--4711Chr01:38063969..38063993 (25 bp)
GCGGCGATCGTGATGGGCATCCTCT
LOC_Os01g65000
Os.25771.1.S1_at--186--9431Chr01:38063976..38064000 (25 bp)
TCGTGATGGGCATCCTCTCCGGCAG
LOC_Os01g65000
Os.25771.1.S1_at--417--7891Chr01:38064009..38064033 (25 bp)
GGTTCACGATGATGGTGGTGCACAA
LOC_Os01g65000
Os.25771.1.S1_at--446--1631Chr01:38064033..38064057 (25 bp)
AGCGGTCGCGCCTCCTGCAGCAGGT
LOC_Os01g65000
Os.25771.1.S1_at--1089--3551Chr01:38064244..38064268 (25 bp)
CATCATCTGCTGGAACGTGGTGGTC
LOC_Os01g65000
Os.25771.1.S1_at--929--8171Chr01:38064255..38064279 (25 bp)
GGAACGTGGTGGTCACCAGCCTCGT
LOC_Os01g65000
Os.25771.1.S1_at--744--6571Chr01:38064302..38064326 (25 bp)
GTTCCCCTCCGGATGCCCGAGGAGG
LOC_Os01g65000
Os.25771.1.S1_at--812--9931Chr01:38064395..38064419 (25 bp)
TACGACTCCACCAAGCACGGATGGT
LOC_Os01g65000
Os.25771.1.S1_at--216--8011Chr01:38064413..38064437 (25 bp)
GGATGGTACTCCGACAACAACGACA
LOC_Os01g65000
Os.25771.1.S1_at--249--1631Chr01:38064467..38064491 (25 bp)
AGCGGCGTCACGCAGAACGTCTGAT
NONE
Os.25771.1.S1_at--1129--7171Chr01:38064485..38064509 (25 bp)
GTCTGATGATACGTGTCGGTTTTTT
NONE
Target Sequence 
GCGGCGATCGTGATGGGCATCCTCTCCGGCAGCATCCCGTGGTTCACGATGATGGTGGTGCACAAGCGGTCGCGCCTCCT
GCAGCAGGTGGACGACACCCTGGGCGTCTTCCACACCCACGCCGTCGCCGGATTCCTCGGCGGCGCCACCACGGGCCTCT
TCGCCGAGCCCGTCCTCTGCTCCCTCTTCCTCCCCGTCACCAACTCCCGCGGCGCCTTCTACCCCGGCCGCGGCGGCGGC
CTCCAGTTCGTCCGCCAGGTGGCCGGCGCCCTCTTCATCATCTGCTGGAACGTGGTGGTCACCAGCCTCGTCTGCCTCGC
CGTCCGCGCCGTGGTTCCCCTCCGGATGCCCGAGGAGGAGCTCGCCATCGGCGACGACGCCGTGCACGGGGAGGAGGCGT
ACGCGCTGTGGGGCGACGGCGAGAAGTACGACTCCACCAAGCACGGATGGTACTCCGACAACAACGACACGCACCACAAC
AACAACAAGGCCGCGCCCAGCGGCGTCACGCAGAACGTCTGATGATACGTGTCGGTTTTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.25771.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis