Browse Element(s) Details


Os.25780.1.S1_s_at

Description gb:AK067751.1
DB_XREF= gi:32977769
TID=Os.25780.1
CNT=12
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.25780 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013116L22, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013116L22, full insert sequence.
FL= gb:AK067751.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5551011/11Zinc finger, C3HC4 type family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g55480Os.49456.1.S1_at10/114+32775229..32780712Zn-finger in ubiquitin-hydrolases and other protein, expressed
LOC_Os04g55490Os.55538.1.S1_at11/114+32782815..32783933expressed protein
LOC_Os04g55500Os.5453.1.S1_at11/114+32787254..32793839expressed protein
LOC_Os04g55510Os.25780.1.S1_s_at11/114+32803766..32809289Zinc finger, C3HC4 type family protein, expressed
LOC_Os04g55520Os.22629.1.S1_at11/114+32811544..32812764AP2 domain containing protein, expressed
LOC_Os04g55530OsAffx.22492.1.S1_at1/114+32815039..32821156retrotransposon protein, putative, unclassified
LOC_Os04g55530OsAffx.22492.1.S1_x_at1/114+32815039..32821156retrotransposon protein, putative, unclassified
LOC_Os04g55540Os.31312.5.S1_x_at4/114+32821477..32825082retrotransposon protein, putative, unclassified
LOC_Os04g55540Os.31312.2.S1_x_at4/114+32821477..32825082retrotransposon protein, putative, unclassified
LOC_Os04g55540Os.31312.1.S1_at1/114+32821477..32825082retrotransposon protein, putative, unclassified
LOC_Os04g55550OsAffx.26615.1.S1_at11/114+32833967..32834859hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.25780.1.S1_s_at--739--7731Chr04:32808141..32808165 (25 bp)
GGTGGAGTCGACATTCATGACAGAC
LOC_Os04g55510
Os.25780.1.S1_s_at--473--5631Chr04:32808163..32808187 (25 bp)
GACACAGGGATATGCGCCTTGACAT
LOC_Os04g55510
Os.25780.1.S1_s_at--335--8891Chr04:32808278..32808300 (23 bp)
TGAGGAGCTATTGGCACTGGAAGAA
LOC_Os04g55510
Os.25780.1.S1_s_at--849--3751Chr04:32808369..32808393 (25 bp)
CTCATCATGGAGGTTGGAAGCATCT
LOC_Os04g55510
Os.25780.1.S1_s_at--543--7991Chr04:32808923..32808947 (25 bp)
GGATGATCTCGGGACACTGGACTGT
LOC_Os04g55510
Os.25780.1.S1_s_at--350--1951Chr04:32808938..32808962 (25 bp)
ACTGGACTGTGGACATGACTTCCAT
LOC_Os04g55510
Os.25780.1.S1_s_at--917--3631Chr04:32808956..32808980 (25 bp)
CTTCCATGTTGGATGCGTCAGGCAA
LOC_Os04g55510
Os.25780.1.S1_s_at--220--8571Chr04:32808985..32809009 (25 bp)
TGGTTGTGAAGAACACCTGTCCCAT
LOC_Os04g55510
Os.25780.1.S1_s_at--1015--5491Chr04:32808995..32809019 (25 bp)
GAACACCTGTCCCATATGCAAAAAT
LOC_Os04g55510
Os.25780.1.S1_s_at--632--2431Chr04:32809015..32809039 (25 bp)
AAAATACTGCTCTGAAGTCTTAGAA
LOC_Os04g55510
Os.25780.1.S1_s_at--111--6391Chr04:32809074..32809098 (25 bp)
GATCGCAAGATCGTTTAGTGATTCA
LOC_Os04g55510
Target Sequence 
GGTGGAGTCGACATTCATGACAGACACAGGGATATGCGCCTTGACATAGACAACATGTNTTATGAGGAGCTATTGGCACT
GGAAGAAAGAATAGGCAATGTTAGCACTGGCCTCAGTGAGGAAGAAGTGACNAAGCTCCTAAAGCAAAGGAAATTCTCAT
CATGGAGGTTGGAAGCATCTGTGGAAGAAGAGCCATGCTGTATCTGCCAGGAAGAGTATGTTGATGGGGATGATCTCGGG
ACACTGGACTGTGGACATGACTTCCATGTTGGATGCGTCAGGCAATGGCTGGTTGTGAAGAACACCTGTCCCATATGCAA
AAATACTGCTCTGAAGTCTTAGAAAAAGCACAGGGCNGTAAACACTGNGTGCTTGTTCGATCGCAAGATCGTTTAGTGAT
TCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.25780.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis