Browse Element(s) Details


Os.25983.1.S1_a_at

Description gb:AK071965.1
DB_XREF= gi:32981988
TID=Os.25983.1
CNT=29
FEA=FLmRNA
TIER=FL+Stack
STK=6
UG=Os.25983 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023119I24, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013081B11, full insert sequence.
FL= gb:AK072759.1 gb:AK119667.1 gb:AK100762.1 gb:AK060280.1 gb:AK071965.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1701011/11RNA and export factor-binding protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g16960Os.51147.1.S1_at11/113+9404652..940589433 kDa secretory protein, putative, expressed
LOC_Os03g16970OsAffx.12888.1.S1_at11/113+9412869..9413507expressed protein
LOC_Os03g16980Os.12349.1.S1_at11/113+9415551..9419660RmlD substrate binding domain containing protein, expressed
LOC_Os03g16990OsAffx.25114.1.S1_at11/113+9420030..9420745hypothetical protein
LOC_Os03g17000Os.10340.1.S1_at11/113+9424485..9427752rhamnose biosynthetic enzyme 1, putative, expressed
LOC_Os03g17010Os.25983.1.S2_at11/113+9428357..9432082RNA and export factor-binding protein, putative, expressed
LOC_Os03g17010Os.25983.1.S1_a_at11/113+9428357..9432082RNA and export factor-binding protein, putative, expressed
LOC_Os03g17020Os.5482.1.S1_at11/113+9434631..9437965ARF GAP-like zinc finger-containing protein ZIGA2, putative, expressed
LOC_Os03g17030Os.53106.1.S1_at11/113+9440218..9444446polyadenylate binding protein, types 1, 2, 3, 4 family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003676molecular_functionnucleic acid binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.25983.1.S1_a_at--87--211Chr03:9430716..9430740 (25 bp)
ATTTGCAAGGCGTGGCGATGCTGTC
LOC_Os03g17010
Os.25983.1.S1_a_at--902--10831Chr03:9430630..9430654 (25 bp)
TTGGGACCAATACTCCTACAGCTGC
LOC_Os03g17010
Os.25983.1.S1_a_at--577--9951Chr03:9430059..9430083 (25 bp)
TACCGCAGGGTAGACCTCGTCCAAG
LOC_Os03g17010
Os.25983.1.S1_a_at--740--1371Chr03:9429962..9429986 (25 bp)
AGAGCGTAGCCAGCCAAAGTCTGCT
LOC_Os03g17010
Os.25983.1.S1_a_at--320--6351Chr03:9429901..9429925 (25 bp)
GATGCGATGCAGACCAACTAGATCT
LOC_Os03g17010
Os.25983.1.S1_a_at--1161--6411Chr03:9429881..9429905 (25 bp)
GATCTTCACGGTGTTGATATTTCAA
LOC_Os03g17010
Os.25983.1.S1_a_at--149--6291Chr03:9429842..9429866 (25 bp)
GATGTTTATCTGCTTGTTCCTGCTA
LOC_Os03g17010
Os.25983.1.S1_a_at--612--10791Chr03:9429829..9429853 (25 bp)
TTGTTCCTGCTATTTGTGCTACCAT
LOC_Os03g17010
Os.25983.1.S1_a_at--58--10831Chr03:9429816..9429840 (25 bp)
TTGTGCTACCATGTTCAGTGGCAAC
LOC_Os03g17010
Os.25983.1.S1_a_at--1060--8751Chr03:9429778..9429802 (25 bp)
TTTGTCGGGTCTTGGTTTACTGAAT
LOC_Os03g17010
Os.25983.1.S1_a_at--171--5191Chr03:9429757..9429781 (25 bp)
GAATTGTACGGTTTTATGTGTCTAC
LOC_Os03g17010
Target Sequence 
ATTTGCAAGGCGTGGCGATGCTGTCGCAGCAGTGAAGAAATATAACAATGTGCAACTTGATGGTAAGCCAATGAAAATAG
AGATTCTTGGGACCAATACTCCTACAGCTGCAGCTGCTCTTCCAGCAAATAACGGAGGCTACGTTAGAAATGTTGCTAAG
AGTGCACCAAGGGGTGGCCCAGCTGGACTACCGCAGGGTAGACCTCGTCCAAGGGGGGGTGGGAGGCGCCGTGGTGGCGG
AGGAGGCAGTGGTGGTCCTGGTGGATCCGGTGGTCGCCGTGGCAAAGAGCGTAGCCAGCCAAAGTCTGCTGAAGAACTTG
ATGCTGACTTGGAGAAATACCATGCAGATGCGATGCAGACCAACTAGATCTTCACGGTGTTGATATTTCAACATGAAATC
TGAAGGATGTTTATCTGCTTGTTCCTGCTATTTGTGCTACCATGTTCAGTGGCAACAACAAAACCTTTGTTTGTCGGGTC
TTGGTTTACTGAATTGTACGGTTTTATGTGTCTAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.25983.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis