Browse Element(s) Details


Os.26032.1.S1_at

Description gb:AK067629.1
DB_XREF= gi:32977647
TID=Os.26032.1
CNT=39
FEA=FLmRNA
TIER=FL+Stack
STK=16
UG=Os.26032 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013002F05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013111L12, full insert sequence.
FL= gb:AK098907.1 gb:AK067629.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g129202/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g12864OsAffx.25367.1.S1_at1/114+7091153..7094846retrotransposon, putative, centromere-specific
LOC_Os04g12880OsAffx.5986.2.A1_at5/114+7096848..7100159retrotransposon protein, putative, unclassified
LOC_Os04g12890Os.40360.1.S1_x_at1/114+7101475..7105484hypothetical protein
LOC_Os04g12900Os.14583.1.S1_at4/114+7108528..7110733Indole-3-acetate beta-glucosyltransferase, putative
LOC_Os04g12920Os.26032.1.S1_at2/114+7117054..7117489expressed protein
LOC_Os04g12950Os.28875.2.A1_x_at11/114+7118386..7131985Indole-3-acetate beta-glucosyltransferase, putative
LOC_Os04g12960Os.16198.1.S1_at11/114+7133541..7135788UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os04g12970Os.6101.1.S1_at11/114+7136658..7139646Indole-3-acetate beta-glucosyltransferase, putative, expressed
LOC_Os04g12970Os.39636.1.A1_x_at2/114+7136658..7139646Indole-3-acetate beta-glucosyltransferase, putative, expressed
LOC_Os04g12970Os.28875.2.A1_x_at2/114+7136658..7139646Indole-3-acetate beta-glucosyltransferase, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26032.1.S1_at--304--9652Chr03:17632202..17632226 (25 bp)
TCAGATTCTTCTGAAGGCCCAGTTC
NONE
Os.26032.1.S1_at--204--8412Chr03:17632217..17632241 (25 bp)
GGCCCAGTTCTTTATATTATTCATT
NONE
Os.26032.1.S1_at--621--5731NONE
GACTGATTGAGCTTGGTTGTTTCTG
NONE
Os.26032.1.S1_at--645--7911Chr03:17632429..17632453 (25 bp)
GGTTGCATTGAGAGTACCATGTTCA
NONE
Os.26032.1.S1_at--766--5432Chr03:17632503..17632527 (25 bp)
GAACCTGGTTGTTTCTGGAGGACTA
NONE
Os.26032.1.S1_at--95--8351Chr03:17632536..17632560 (25 bp)
GGCTGGAGTATCATATTGTTTACAC
NONE
Os.26032.1.S1_at--136--6511Chr03:17632573..17632597 (25 bp)
GATATCTGGAGGATCATATTGTTTA
NONE
Os.26032.1.S1_at--125--3291Chr03:17632601..17632625 (25 bp)
CAAATGTTCGATGATATCTGGAGGA
NONE
Os.26032.1.S1_at--80--8752Chr03:17632686..17632710 (25 bp)
TGTAAGAGAGGTCTCGATGATCTGC
NONE
Os.26032.1.S1_at--802--3131Chr03:17632744..17632768 (25 bp)
AATTTTGTGCAAACATGACTGATGT
NONE
Os.26032.1.S1_at--1004--7592Chr03:17632816..17632840 (25 bp)
GGGAAGGACTGCAACACTTGAAATT
NONE
Target Sequence 
TCAGATTCTTCTGAAGGCCCAGTTCTTTATATTATTCATTGGACTGATTGAGCTTGGTTGTTTCTGGAGGACCAGGTTGC
ATGGATGGTAGAATGTGGTTGCATTGAGAGTACCATGTTCAGATTCTTCTGCTGGCCCTGTTCTTTATNTTTTTTTTTTT
CACTGGACTATTGAACCTGGTTGTTTCTGGAGGACTACGGAGCATGGCTGGAGTATCATATTGTTTACACCAAGTGTTCG
ATGATATCTGGAGGATCATATTGTTTACACCAAATGTTCGATGATATCTGGAGGATAACCTGATGTGGATTATGAGCTTG
GCTTTGTCTTGACAAATAATAGATGAGTTGCTGCTTGTAAGAGAGGTCTCGATGATCTGCTAATTGCCACNTGTTTAGTT
ACATGGGGTGAAATAATTTTGTGCAAACATGACTGATGTATATGAAAATACGTCTCTGATTGGGATCTTGTAAACTTATT
TGATTTGGGAAGGACTGCAACACTTGAAATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26032.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis