Browse Element(s) Details


Os.39636.1.A1_x_at

Description gb:AU166388
DB_XREF= gi:12404787
DB_XREF=AU166388
CLONE=C11816
TID=Os.39636.1
CNT=4
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.39636 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequences
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g1272011/11Indole-3-acetate beta-glucosyltransferase, putative, expressed
LOC_Os04g129702/11Indole-3-acetate beta-glucosyltransferase, putative, expressed
LOC_Os04g126691/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g12660OsAffx.13794.1.S1_s_at11/114+6988798..6989927Vignain precursor, putative
LOC_Os04g12669OsAffx.13792.1.S1_at11/114+6994181..7001007hypothetical protein
LOC_Os04g12669OsAffx.17138.1.S1_at4/114+6994181..7001007hypothetical protein
LOC_Os04g12669Os.38884.1.S1_at1/114+6994181..7001007hypothetical protein
LOC_Os04g12669Os.39636.1.A1_x_at1/114+6994181..7001007hypothetical protein
LOC_Os04g12678Os.28875.2.A1_x_at6/114+7001375..7002638Indole-3-acetate beta-glucosyltransferase, putative
LOC_Os04g12690Os.16198.1.S1_at6/114+7004639..7006505Indole-3-acetate beta-glucosyltransferase, putative
LOC_Os04g12690Os.34112.1.S1_at2/114+7004639..7006505Indole-3-acetate beta-glucosyltransferase, putative
LOC_Os04g12690Os.30989.1.S1_at1/114+7004639..7006505Indole-3-acetate beta-glucosyltransferase, putative
LOC_Os04g12700Os.34112.1.S1_at3/114+7006789..7007598retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g12710NANA4+7008169..7008786Indole-3-acetate beta-glucosyltransferase, putative
LOC_Os04g12720Os.39636.1.A1_x_at11/114+7011055..7013322Indole-3-acetate beta-glucosyltransferase, putative, expressed
LOC_Os04g12720Os.6101.1.S1_at2/114+7011055..7013322Indole-3-acetate beta-glucosyltransferase, putative, expressed
LOC_Os04g12720Os.28875.2.A1_x_at1/114+7011055..7013322Indole-3-acetate beta-glucosyltransferase, putative, expressed
LOC_Os04g12730OsAffx.31174.5.S1_x_at5/114+7015941..7020480hypothetical protein
LOC_Os04g12730OsAffx.31174.4.S1_x_at5/114+7015941..7020480hypothetical protein
LOC_Os04g12730Os.52765.1.S1_at5/114+7015941..7020480hypothetical protein
LOC_Os04g12744OsAffx.26006.1.S1_at11/114+7023883..7027836expressed protein
LOC_Os04g12744Os.54954.1.S1_at11/114+7023883..7027836expressed protein
LOC_Os04g12744Os.54954.1.S1_x_at11/114+7023883..7027836expressed protein
LOC_Os04g12760NANA4+7037021..7042985retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0008194molecular_functionUDP-glycosyltransferase activity
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
GO:0016758molecular_functiontransferase activity, transferring hexosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.39636.1.A1_x_at--210--1031Chr04:7011261..7011285 (25 bp)
AGGTCAAGGTGCTGAACTGCTGATG
LOC_Os04g12720
Os.39636.1.A1_x_at--100--7831Chr04:7011260..7011284 (25 bp)
GGTCAAGGTGCTGAACTGCTGATGT
LOC_Os04g12720
Os.39636.1.A1_x_at--614--1031Chr04:7011255..7011279 (25 bp)
AGGTGCTGAACTGCTGATGTTTTCC
LOC_Os04g12720
Os.39636.1.A1_x_at--110--4072Chr04:7011229..7011253 (25 bp)
CGAGTCAGCAGAAGTAAATTAAGAG
LOC_Os04g12720
Os.39636.1.A1_x_at--109--3411Chr04:7011221..7011245 (25 bp)
CAGAAGTAAATTAAGAGCAGAAGTA
LOC_Os04g12720
Os.39636.1.A1_x_at--1006--772Chr04:7136854..7136878 (25 bp)
ATGGTAATTTATACTACTTACAATT
LOC_Os04g12970
Os.39636.1.A1_x_at--1141--2551Chr04:7011137..7011161 (25 bp)
AACTGAAGTGTCGTTAGCTTATGTC
LOC_Os04g12720
Os.39636.1.A1_x_at--680--3851Chr04:7011135..7011159 (25 bp)
CTGAAGTGTCGTTAGCTTATGTCCT
LOC_Os04g12720
Os.39636.1.A1_x_at--970--2851Chr04:7011132..7011156 (25 bp)
AAGTGTCGTTAGCTTATGTCCTCGT
LOC_Os04g12720
Os.39636.1.A1_x_at--1018--7192Chr04:7011128..7011152 (25 bp)
GTCGTTAGCTTATGTCCTCGTCGAG
LOC_Os04g12720
Os.39636.1.A1_x_at--378--10431Chr04:7011124..7011148 (25 bp)
TTAGCTTATGTCCTCGTCGAGGGCA
LOC_Os04g12720
Target Sequence 
AGGTCAAGGTGCTGAACTGCTGATGTTTTCCNCGAGTCAGCAGAAGTAAATTAAGAGCAGAAGTAAATTAAGTTTNCAGT
GTGTGTAAAATGGTAATTTATACTACTTACAATTTTTATTTCANAACTGAAGTGTCGTTAGCTTATGTCCTCGTCGAGGG
CA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.39636.1.A1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis