Browse Element(s) Details


OsAffx.26006.1.S1_at

Description tigr:9632.m01150
TID=OsAffx.26006.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g1274411/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g12669OsAffx.13792.1.S1_at11/114+6994181..7001007hypothetical protein
LOC_Os04g12669OsAffx.17138.1.S1_at4/114+6994181..7001007hypothetical protein
LOC_Os04g12669Os.38884.1.S1_at1/114+6994181..7001007hypothetical protein
LOC_Os04g12669Os.39636.1.A1_x_at1/114+6994181..7001007hypothetical protein
LOC_Os04g12678Os.28875.2.A1_x_at6/114+7001375..7002638Indole-3-acetate beta-glucosyltransferase, putative
LOC_Os04g12690Os.16198.1.S1_at6/114+7004639..7006505Indole-3-acetate beta-glucosyltransferase, putative
LOC_Os04g12690Os.34112.1.S1_at2/114+7004639..7006505Indole-3-acetate beta-glucosyltransferase, putative
LOC_Os04g12690Os.30989.1.S1_at1/114+7004639..7006505Indole-3-acetate beta-glucosyltransferase, putative
LOC_Os04g12700Os.34112.1.S1_at3/114+7006789..7007598retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g12710NANA4+7008169..7008786Indole-3-acetate beta-glucosyltransferase, putative
LOC_Os04g12720Os.39636.1.A1_x_at11/114+7011055..7013322Indole-3-acetate beta-glucosyltransferase, putative, expressed
LOC_Os04g12720Os.6101.1.S1_at2/114+7011055..7013322Indole-3-acetate beta-glucosyltransferase, putative, expressed
LOC_Os04g12720Os.28875.2.A1_x_at1/114+7011055..7013322Indole-3-acetate beta-glucosyltransferase, putative, expressed
LOC_Os04g12730OsAffx.31174.5.S1_x_at5/114+7015941..7020480hypothetical protein
LOC_Os04g12730OsAffx.31174.4.S1_x_at5/114+7015941..7020480hypothetical protein
LOC_Os04g12730Os.52765.1.S1_at5/114+7015941..7020480hypothetical protein
LOC_Os04g12744OsAffx.26006.1.S1_at11/114+7023883..7027836expressed protein
LOC_Os04g12744Os.54954.1.S1_at11/114+7023883..7027836expressed protein
LOC_Os04g12744Os.54954.1.S1_x_at11/114+7023883..7027836expressed protein
LOC_Os04g12760NANA4+7037021..7042985retrotransposon protein, putative, unclassified
LOC_Os04g12770Os.28943.1.S1_x_at3/114+7043607..7047000retrotransposon protein, putative, unclassified
LOC_Os04g12770OsAffx.29322.1.S1_x_at1/114+7043607..7047000retrotransposon protein, putative, unclassified
LOC_Os04g12780NANA4+7048782..7050014retrotransposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26006.1.S1_at--1033--8411Chr04:7027756..7027780 (25 bp)
GGCCGAAATCCGTATCACGCAGCCA
LOC_Os04g12744
OsAffx.26006.1.S1_at--718--10171Chr04:7027744..7027768 (25 bp)
TATCACGCAGCCACAGGTTCTGGTA
LOC_Os04g12744
OsAffx.26006.1.S1_at--460--2131Chr04:7027732..7027756 (25 bp)
ACAGGTTCTGGTACACGCCACAGGG
LOC_Os04g12744
OsAffx.26006.1.S1_at--583--1931Chr04:7027697..7027721 (25 bp)
ACGGCCACGTTGGAAGAGGTGATCC
LOC_Os04g12744
OsAffx.26006.1.S1_at--953--6171Chr04:7027646..7027670 (25 bp)
GAGGAGATAGCAGCGCTGTTCCTTC
LOC_Os04g12744
OsAffx.26006.1.S1_at--954--291Chr04:7027640..7027664 (25 bp)
ATAGCAGCGCTGTTCCTTCAAGTGG
LOC_Os04g12744
OsAffx.26006.1.S1_at--843--6691Chr04:7027629..7027653 (25 bp)
GTTCCTTCAAGTGGCGCTGGCACTG
LOC_Os04g12744
OsAffx.26006.1.S1_at--381--3831Chr04:7027565..7027589 (25 bp)
CTGCCCCAGACGCAACGGAGAATGA
LOC_Os04g12744
OsAffx.26006.1.S1_at--21--5351Chr04:7027542..7027566 (25 bp)
GAAGTTGTGGCTACTAAGGCAGCAA
LOC_Os04g12744
OsAffx.26006.1.S1_at--914--2931Chr04:7027527..7027551 (25 bp)
AAGGCAGCAAATGAGACCGCGGCTA
LOC_Os04g12744
OsAffx.26006.1.S1_at--786--5991Chr04:7027494..7027539 (25 bp)
GAGACCGCGGCTAAGTGCAAAGAAA
LOC_Os04g12744
Target Sequence 
GGCCGAAATCCGTATCACGCAGCCACAGGTTCTGGTACACGCCACAGGGGCTGATGCTGACGGCCACGTTGGAAGAGGTG
ATCCAGCGGGGAGGGGTCGTGCTGCCGTTGGAGGAGATAGCAGCGCTGTTCCTTCAAGTGGCGCTGGCACTGGTGGAGCT
GCCCACGGCGTGGCGGCGGTCGCAGCTGCTCCTGCCCCAGACGCAACGGAGAATGAAGTTGTGGCTACTAAGGCAGCAAA
TGAGACCGCGGCTAAGTGCAAAGAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26006.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis