Browse Element(s) Details


Os.6101.1.S1_at

Description gb:AK106302.1
DB_XREF= gi:32991511
TID=Os.6101.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.6101 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-101-C06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-101-C06, full insert sequence.
FL= gb:AK106302.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g1297011/11Indole-3-acetate beta-glucosyltransferase, putative, expressed
LOC_Os04g127202/11Indole-3-acetate beta-glucosyltransferase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g12920Os.26032.1.S1_at2/114+7117054..7117489expressed protein
LOC_Os04g12950Os.28875.2.A1_x_at11/114+7118386..7131985Indole-3-acetate beta-glucosyltransferase, putative
LOC_Os04g12960Os.16198.1.S1_at11/114+7133541..7135788UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os04g12970Os.6101.1.S1_at11/114+7136658..7139646Indole-3-acetate beta-glucosyltransferase, putative, expressed
LOC_Os04g12970Os.39636.1.A1_x_at2/114+7136658..7139646Indole-3-acetate beta-glucosyltransferase, putative, expressed
LOC_Os04g12970Os.28875.2.A1_x_at2/114+7136658..7139646Indole-3-acetate beta-glucosyltransferase, putative, expressed
LOC_Os04g12980Os.14583.1.S1_at11/114+7143586..7146224Indole-3-acetate beta-glucosyltransferase, putative, expressed
LOC_Os04g12990OsAffx.26011.1.S1_at11/114+7146697..7148291F-box domain containing protein
LOC_Os04g13000OsAffx.7046.1.S1_at7/114+7150545..7154748retrotransposon protein, putative, LINE subclass
LOC_Os04g13010OsAffx.26012.1.S1_at11/114+7157534..7158379F-box domain containing protein
LOC_Os04g13020NANA4+7160118..7163087retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g13030Os.10703.2.S1_x_at1/114+7163405..7169503retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0008194molecular_functionUDP-glycosyltransferase activity
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
GO:0016758molecular_functiontransferase activity, transferring hexosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6101.1.S1_at--1018--1611Chr04:7137207..7137231 (25 bp)
AGCTGGACAAGAGCGGCATCTTACA
LOC_Os04g12970
Os.6101.1.S1_at--479--9711Chr04:7136996..7137020 (25 bp)
TCAAGCACCTAGCTATCAGAGATAT
LOC_Os04g12970
Os.6101.1.S1_at--594--1352Chr06:6700070..6700371 (25 bp)
AGAGATATTCTAGTTCTGACTTCTG
NONE
Os.6101.1.S1_at--768--3851Chr04:7136964..7136988 (25 bp)
CTGACTTCTGAATACAATTGGTTTT
LOC_Os04g12970
Os.6101.1.S1_at--1111--7852Chr05:26647361..26647380 (20 bp)
GGTTTTTCTTCCTAGAGAAGTTCAT
NONE
Os.6101.1.S1_at--58--1052Chr04:7136912..7136936 (25 bp)
AGGTGCTGATGTTTTCCACGAGTCA
LOC_Os04g12970
Os.6101.1.S1_at--242--2712Chr04:7136779..7136803 (25 bp)
AAGCTACCTTAGAGATATCACGATA
LOC_Os04g12970
Os.6101.1.S1_at--136--9891Chr04:7136729..7136753 (25 bp)
TACTTTGAGAGTACCGGGCATAGCT
LOC_Os04g12970
Os.6101.1.S1_at--879--7571Chr04:7136714..7136738 (25 bp)
GGGCATAGCTTGCTTACCAAATTAC
LOC_Os04g12970
Os.6101.1.S1_at--1133--772Chr04:7136678..7136702 (25 bp)
ATGTGCATGCATCAATTTCCTCTGA
LOC_Os04g12970
Os.6101.1.S1_at--1087--4272Chr04:7136660..7136684 (25 bp)
CCTCTGATACCGGAAAAACTGTTAT
LOC_Os04g12970
Target Sequence 
AGCTGGACAAGAGCGGCATCTTACAAAGGGAAGAGGTAGAGAGATGCATCCGGGAGGTGATGGATGGTGACAGGAAGGAG
GACTACAGGAGGAATGCTACAAGGTTGATGAAGAAAGCTAAGGAGTCAATGCAGGAAGGAGGGAGCTCTGACAAGAATAT
TGCTGAATTTGCTGCGAAGTATTCAAATTGACAAAAATTATTGCTGAAATCTCAAGCACCTAGCTATCAGAGATATTCTA
GTTCTGACTTCTGAATACAATTGGTTTTTCTTCCTAGAGAAGTTCATGGAGGTCAAGGTGCTGATGTTTTCCACGAGTCA
GCAGAAGTAAATTAAGTTTACAGTGTGTGTAAAATGGTAATTTATACTACTTACAATTTTTATTTTATAATTGAAGTGTC
GTTAACTTATGTCCTCGTCGAGGGCAACAAGCTACCTTAGAGATATCACGATAACAAATGAATTATGTAAGCTTTACATA
CTTTGAGAGTACCGGGCATAGCTTGCTTACCAAATTACAGAACATATATATGTGCATGCATCAATTTCCTCTGATACCGG
AAAAACTGTTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6101.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis